View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_53 (Length: 258)

Name: NF16780_low_53
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_53
NF16780_low_53
[»] chr4 (13 HSPs)
chr4 (15-154)||(35283445-35283584)
chr4 (15-150)||(35277934-35278069)
chr4 (20-154)||(35241152-35241286)
chr4 (157-258)||(35283625-35283718)
chr4 (29-149)||(35271266-35271386)
chr4 (30-126)||(35275295-35275391)
chr4 (199-258)||(35241357-35241416)
chr4 (200-257)||(35275487-35275544)
chr4 (31-125)||(35286991-35287085)
chr4 (105-154)||(35253480-35253529)
chr4 (200-258)||(35278148-35278207)
chr4 (202-231)||(35271467-35271496)
chr4 (206-258)||(35287195-35287247)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 35283445 - 35283584
Alignment:
Q  15 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35283445 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaaaactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 35283544  T
Q  115 taattacatcacaggtatcagacgagcaaataattcctcc 154  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  35283545 taattacatcacaggtatcggacgagcaaagaattcctcc 35283584  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 35277934 - 35278069
Alignment:
Q  15 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  35277934 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaggactcaccataaaggtcttcattatgacacgctgattgagatcccatactt 35278033  T
Q  115 taattacatcacaggtatcagacgagcaaataattc 150  Q
    |||||| ||||||||||||||||||||||| |||||    
T  35278034 taattaaatcacaggtatcagacgagcaaagaattc 35278069  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 35241152 - 35241286
Alignment:
Q  20 tgagtagttgttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaatt 119  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||  || ||| |||||||||||||||| |||||||||||||||    
T  35241152 tgagtagttgtcattcagttttgaatactaaaagatgagtgtaagactcacaatacagtggttaatcctgacacgctgattgagatcccatactttaatt 35241251  T
Q  120 acatcacaggtatcagacgagcaaataattcctcc 154  Q
    |||| || |||||| |||||||||| | |||||||    
T  35241252 acattactggtatcggacgagcaaagagttcctcc 35241286  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 35283625 - 35283718
Alignment:
Q  157 ccaacaacattgcacaacactctctcgagcaatacatatacatatatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 256  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35283625 ccaacaacattgcacaacactctctcgagcaatacatat--------atatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 35283716  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 35271266 - 35271386
Alignment:
Q  29 gttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatcacag 128  Q
    |||||||||||||||||||||||| | |||||| ||||||||  ||||||| || ||| |||||| ||| | ||| ||||||||||||||| |||||||     
T  35271266 gttattcagttttgaatactaaaatatgagtgttagactcactgtaaagttgttaatcgtgacacactgttcgagatcccatactttaattgcatcacat 35271365  T
Q  129 gtatcagacgagcaaataatt 149  Q
    |||||||||||||||| ||||    
T  35271366 gtatcagacgagcaaagaatt 35271386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 35275295 - 35275391
Alignment:
Q  30 ttattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatcac 126  Q
    ||||||||||||||||||||||| |  ||||| ||||||||| ||| |||  | |||||||||||||||||||| ||||||| ||||||| ||||||    
T  35275295 ttattcagttttgaatactaaaatataagtgtcagactcaccttaatgttgctaatcatgacacgctgattgagatcccataatttaattgcatcac 35275391  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 35241357 - 35241416
Alignment:
Q  199 tatatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaaggac 258  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  35241357 tatatatatcatgaaacatcaaaacataatgaatcaatcctcaagttacaatggaaggac 35241416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 35275487 - 35275544
Alignment:
Q  200 atatatatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagga 257  Q
    |||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||    
T  35275487 atatatatgatgaaacatcaaaacataatgaattaatcctcaagttacaaaggaagga 35275544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 35286991 - 35287085
Alignment:
Q  31 tattcagttttgaatactaaaagacgagtgtaagactcaccataaagttcttcatcatgacacgctgattgaggtcccatactttaattacatca 125  Q
    ||||| ||||||||||| |||||| |||||||||||||||| || |||| || ||| | | || | ||||||| |||||||||| |||| |||||    
T  35286991 tattctgttttgaatacaaaaagaggagtgtaagactcaccttacagtttttaatcttaatacaccgattgagatcccatacttgaattccatca 35287085  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 35253480 - 35253529
Alignment:
Q  105 tcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 154  Q
    ||||||||||||||||||||||||||||| |||| ||||| || ||||||    
T  35253480 tcccatactttaattacatcacaggtatcggacgtgcaaagaactcctcc 35253529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 35278148 - 35278207
Alignment:
Q  200 atatatatcatgaaacatcaaaacataatgaaccaatcatcaagttac-aaaggaaggac 258  Q
    |||| |||||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  35278148 atatgtatcatgaaacatcaaaacacaacgaattaatcatcaagttacaaaaggaaggac 35278207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 35271467 - 35271496
Alignment:
Q  202 atatatcatgaaacatcaaaacataatgaa 231  Q
    ||||||||||||||||||||||||||||||    
T  35271467 atatatcatgaaacatcaaaacataatgaa 35271496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 35287195 - 35287247
Alignment:
Q  206 atcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaaggac 258  Q
    ||||||||||| ||| |||||| | | ||||| ||||||||||||||||||||    
T  35287195 atcatgaaacagcaagacataaggcatcaatcctcaagttacaaaggaaggac 35287247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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