View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_57 (Length: 251)
Name: NF16780_low_57
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2470538 - 2470776
Alignment:
| Q |
1 |
cattactagagccccaagcccccaacatttatcatccaacacctactacaccacaacatttagcattctgaaattaattactaagaaccaaaatgggttc |
100 |
Q |
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| T |
2470538 |
cattactagagccccaagcccccaacatttatcatccaacacctactacaccacaacatttagcattctgaaattaattactaagaaccaaaatgggttc |
2470637 |
T |
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| Q |
101 |
aatttctctattgtgtgatttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactatgtgaacgcccacaatgca |
200 |
Q |
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| T |
2470638 |
actttctctattgtgtgttttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactatgtgaacgcccacaatgca |
2470737 |
T |
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| Q |
201 |
gcaagatttgtgattaccagtgctaaaattccaaatatt |
239 |
Q |
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| T |
2470738 |
gcaagatttgtgattaccagtgctaaaattccaaatatt |
2470776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 2478450 - 2478566
Alignment:
| Q |
80 |
actaagaaccaaaatgggttcaatttctctattgtgtgatttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagac |
179 |
Q |
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| T |
2478450 |
actaagaaccaaaatgtgttcattttctctatggtttgttttgggattaatagtcattgtgggtagtcacgttgcacaagcacaagactcaccagcagac |
2478549 |
T |
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| Q |
180 |
tatgtgaacgcccacaa |
196 |
Q |
| |
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| T |
2478550 |
tacgtgaatgctcacaa |
2478566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 2482957 - 2483070
Alignment:
| Q |
83 |
aagaaccaaaatgggttcaatttctctattgtgtgatttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactat |
182 |
Q |
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| T |
2482957 |
aagaaccaaaatgtgttcattttctctatggtttgttttaggattaatattcattgtgggtagtcacgttgcacaagccaaagactctccagcaaactat |
2483056 |
T |
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| Q |
183 |
gtgaacgcccacaa |
196 |
Q |
| |
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| T |
2483057 |
gtgaaggctcacaa |
2483070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 2469598 - 2469704
Alignment:
| Q |
91 |
aaatgggttcaatttctctattgtgtgatttgggattaatactcattgtgggcagtcaagttgcaatatcccaagactcaccagcagactatgtgaacgc |
190 |
Q |
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||||||||||| |||||||||||| || || |||| ||||||| |||| ||||| |||||| |||||||||||||||||||||| |||||||| |
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| T |
2469598 |
aaatgggttcattttctctattgttcctgttaggtttaacactcattatgggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgc |
2469697 |
T |
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| Q |
191 |
ccacaat |
197 |
Q |
| |
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||||||| |
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| T |
2469698 |
ccacaat |
2469704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 2466357 - 2466404
Alignment:
| Q |
160 |
cccaagactcaccagcagactatgtgaacgcccacaatgcagcaagat |
207 |
Q |
| |
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| T |
2466357 |
cccaagactcacaagcagactatgtgaacgctcacaacgaagcaagat |
2466404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 2473944 - 2473980
Alignment:
| Q |
160 |
cccaagactcaccagcagactatgtgaacgcccacaa |
196 |
Q |
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| T |
2473944 |
cccaagactcaccagcagactacgtgaatgcccacaa |
2473980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 2486203 - 2486239
Alignment:
| Q |
160 |
cccaagactcaccagcagactatgtgaacgcccacaa |
196 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||| |
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| T |
2486203 |
cccaagactcaccggcagactacgtgaacgcccacaa |
2486239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 3063694 - 3063658
Alignment:
| Q |
160 |
cccaagactcaccagcagactatgtgaacgcccacaa |
196 |
Q |
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||||| |||||| |||||||||||||||||||||||| |
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| T |
3063694 |
cccaaaactcacgagcagactatgtgaacgcccacaa |
3063658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 18015626 - 18015662
Alignment:
| Q |
160 |
cccaagactcaccagcagactatgtgaacgcccacaa |
196 |
Q |
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| T |
18015626 |
cccaaaactcacgagcagactatgtgaacgcccacaa |
18015662 |
T |
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