View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_6 (Length: 544)
Name: NF16780_low_6
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_6 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: scaffold0032 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 12 - 527
Target Start/End: Complemental strand, 46240 - 45725
Alignment:
| Q |
12 |
gcataggaagaagcctttgtaagatgggttgtgtcacttgtgaactatgctgctatactttacaaagtatcacatgtaacttgtggcacaagctaacaaa |
111 |
Q |
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| T |
46240 |
gcataggaagaagcctttgtaagatgggttgtgtcacttgtgaactatgctgctatactttacaaagtatcacatgtaacttgtggcacaagctaacaaa |
46141 |
T |
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| Q |
112 |
cacaaagagagtttaccgtggaagaagacgtcgttttcaacatgatattgagcttggctacacctcaccctcaactgatcatgagagcaataattcgcgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46140 |
cacaaagagagtttaccgtggaagaagacgtcgttttcaacatgatattgagcttggctacacctcaccctcaactgatcatgagagcaataattcgcgt |
46041 |
T |
|
| Q |
212 |
gattacagaagtcatcgttttggaagaaatagaaaatctttgagattgagagaaagaagtagaagaaatggtcactctgtacacctctcaaggatgaaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46040 |
gattacagaagtcatcgttttggaagaaatagaaaatctttgagattgagagaaagaagtagaagaaatggtcactctgtacgcctctcaaggatgaaag |
45941 |
T |
|
| Q |
312 |
ggaagtcttggagagtgaagagctcaagaaagattcaattaagtaaagtcaggaatcgaagtggaaaacctgcgattataagaaggcggcgccttaaacg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45940 |
ggaagtcttggagagtgaagagctcaagaaagattcaattaagtaaagtcaggaatcgaagtggaaaacctgcgattataagaaggcgacgccttaaacg |
45841 |
T |
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| Q |
412 |
atgattcgacatagattttccttaagtctttacagcttatctataacatgctttgcaaaagttcattttaactatggatttgacttatttcaccaagcat |
511 |
Q |
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| T |
45840 |
atgattcgacatagattttccttaagtctttacagcttatctataacatgctttgcaaaagttcattttaactatggatttgacttatttcaccaagcat |
45741 |
T |
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| Q |
512 |
gctgatgaacagatat |
527 |
Q |
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| T |
45740 |
ggtgatgaacagatat |
45725 |
T |
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