View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_61 (Length: 249)
Name: NF16780_low_61
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4825849 - 4825709
Alignment:
| Q |
1 |
agcataggaaagtttaatacaaattgcatcacccattcaagatagaggcacgctatcaacatttgagatgtggtttgatgattcaatttcataattctcc |
100 |
Q |
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| T |
4825849 |
agcatagaaaagtttaatacaaattgcatcacccattcaagatagaggcacgctatcaacatttgagatgtggtttgatgattcaatttcataattctcc |
4825750 |
T |
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| Q |
101 |
aacaaatcataattcaatttcataattttcatgttgtaacc |
141 |
Q |
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| T |
4825749 |
aacaaatcataattcaatttcataattttcatgttgtaacc |
4825709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 5292548 - 5292486
Alignment:
| Q |
17 |
atacaaattgcatcacccattcaagatagaggcacgctatcaacatttgagatgtggtttgat |
79 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5292548 |
atacaaattgcatcacgcatttaagatagaggcacgctatcagcatttgagatgtggtttgat |
5292486 |
T |
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