View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_62 (Length: 249)
Name: NF16780_low_62
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34972285 - 34972424
Alignment:
| Q |
1 |
agctagggttgacaagattaatcagtaaaatgagagaaatcatatataggaaggaatgttcaaattatgcaaaatcattgtaattaaaaattaaaatgat |
100 |
Q |
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| T |
34972285 |
agctagggttgacaagattaatcaataaaatgagagaaatcatatataggaaggagtggtcaaattatgcaaaatcattgtaattaaaaattaaaatgat |
34972384 |
T |
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| Q |
101 |
taggagagtgacaacagatataaaaaacagatatcatggg |
140 |
Q |
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| T |
34972385 |
taggagagtgacaacagatataaaaaacagatatcatggg |
34972424 |
T |
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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 34972487 - 34972571
Alignment:
| Q |
155 |
ttagtactataaccgactgctaccatgctgcaataatgcaattttttattattttaaaaaagttgaaacatgcaaggttgttcat |
239 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972487 |
ttagtagtataaccgactgctaccatgctgcaataatgcaattttttattattttaaaaaagttgaaacatgcaaggttgttcat |
34972571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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