View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_63 (Length: 248)
Name: NF16780_low_63
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 35241397 - 35241582
Alignment:
| Q |
16 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttat |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35241397 |
tcaagttacaatggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcactttttttgcatcccataattttactgttttat |
35241496 |
T |
|
| Q |
116 |
cagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaaca |
201 |
Q |
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| T |
35241497 |
cagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacttctaagatggtagatgaatgtgactttgacgtagtaaca |
35241582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 35278183 - 35278401
Alignment:
| Q |
12 |
atcatcaagttacaaa-ggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgt |
110 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| ||| |
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| T |
35278183 |
atcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgt |
35278282 |
T |
|
| Q |
111 |
tttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || || |
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| T |
35278283 |
tttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaggcagtaacagaagtagaa |
35278382 |
T |
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| Q |
211 |
gtatccatgtagcaaatga |
229 |
Q |
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| T |
35278383 |
gtatccatgttgcaaatga |
35278401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 35283695 - 35283874
Alignment:
| Q |
12 |
atcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgtt |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
35283695 |
atcatcaagttacaaaggaaggactaatgcagaagagtgagtagaag-------------aaagagactcactttttttgcatcccataattttactgtt |
35283781 |
T |
|
| Q |
112 |
ttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaa |
204 |
Q |
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| T |
35283782 |
ttatcagcagaagatgttgcaaatatagttgatcctggttgaaatctcacgtcaaagatggtagacgaatgtgactctgacgtagtaacagaa |
35283874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 35287228 - 35287400
Alignment:
| Q |
16 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaagggg-atatgaaaa-gaaagagactcacnnnnnnngcatcccataattttactgtttt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
35287228 |
tcaagttacaaaggaaggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagactcactttttttgcatcccataattttactgtttt |
35287327 |
T |
|
| Q |
114 |
atcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgac |
186 |
Q |
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| T |
35287328 |
atcagcagaggatgttgcaaatatagttgaacctggtttaaatctaacatcgaagatagtagataaatgtgac |
35287400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 35253630 - 35253800
Alignment:
| Q |
18 |
aagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatca |
117 |
Q |
| |
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|||||||| |||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35253630 |
aagttacataggaaggaataatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatca |
35253729 |
T |
|
| Q |
118 |
gcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactc |
188 |
Q |
| |
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|||||||| |||||||| | ||| |||||||||||||||||||| || ||||||||| | |||||||||| |
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| T |
35253730 |
gcagaagaggttgcaaacacagttgatcctggttgaaatctaacttcgaagatggtatctaaatgtgactc |
35253800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 35271507 - 35271723
Alignment:
| Q |
19 |
agttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnn------gcatcccataattttactgttt |
112 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||| ||| || || | ||||| |||||||||| |
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| T |
35271507 |
agttacaaaggaaagactattgcagaagagtgagtagaaggagctaagaaaagaaagaaacttactcttgttctttttgcgtgccatagttttactgttc |
35271606 |
T |
|
| Q |
113 |
tatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagt |
212 |
Q |
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||||||||||||| ||||||||||||| ||||||| | ||||||| || |||||||||| | | |||||| |||||| || |||| |||| || ||| |
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| T |
35271607 |
tatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatggcatctaaatgtgtctctgatgttgtaaaagaattaccagt |
35271706 |
T |
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| Q |
213 |
atccatgtagcaaatga |
229 |
Q |
| |
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|||||||||||||||| |
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| T |
35271707 |
ttccatgtagcaaatga |
35271723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 35238385 - 35238516
Alignment:
| Q |
93 |
atcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaa |
192 |
Q |
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||||||||||||||||| |||||||| ||||| |||||||||||| | | |||||||||||||||||| ||| |||| | || ||||||||||| ||| |
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| T |
35238385 |
atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagataggagctgaatgtgactgtgat |
35238484 |
T |
|
| Q |
193 |
gtagtaacagaactaaaagtatccatgtagca |
224 |
Q |
| |
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||||||| | || | | |||||||||||||| |
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| T |
35238485 |
gtagtaatacaatcacaggtatccatgtagca |
35238516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 35247083 - 35247196
Alignment:
| Q |
91 |
gcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctg |
190 |
Q |
| |
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|||||||||| |||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||||| ||||||||| || | ||| ||||||| |
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| T |
35247083 |
gcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatgatatctaaatctgactcta |
35247182 |
T |
|
| Q |
191 |
aagtagtaacagaa |
204 |
Q |
| |
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| | |||||||||| |
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|
| T |
35247183 |
atgcagtaacagaa |
35247196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 35275605 - 35275715
Alignment:
| Q |
119 |
cagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaagtagtaacagaactaaaagtatccat |
218 |
Q |
| |
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||||||| ||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||| | |||||||||| || | | ||||| |
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|
| T |
35275605 |
cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatggcatctgaatgttactctattgaagtaacagaattaccaatttccat |
35275704 |
T |
|
| Q |
219 |
gtagcaaatga |
229 |
Q |
| |
|
||||||||||| |
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|
| T |
35275705 |
gtagcaaatga |
35275715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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