View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_69 (Length: 238)
Name: NF16780_low_69
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 6584754 - 6584540
Alignment:
| Q |
15 |
aataatcttgcaaagacaatggttttttcattaaatatttttcacacaagttgaattttgcctatatgcctcgacatatttagaagctccctgatctgag |
114 |
Q |
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| T |
6584754 |
aataatcttgcaaagacaatggtgttttcattaaatatttttcacacaagttgaattttgcctatatgcctcgacatttttagaagctccctgatctgag |
6584655 |
T |
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| Q |
115 |
tttttctatagatagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctaga |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6584654 |
tttttctatagatagataaaaacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctaga |
6584555 |
T |
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| Q |
215 |
agctaatttaaccta |
229 |
Q |
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| T |
6584554 |
aactaatttaaccta |
6584540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 6590763 - 6590631
Alignment:
| Q |
95 |
tagaagctccctgatctgagtttttctatagatagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttg |
194 |
Q |
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||||||||||||| |||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6590763 |
tagaagctccctggtctgagtttttctatagaca----atcacttacaaacttataaaggcttcttttcaagtaaaagaaacaaataattgtctcatttg |
6590668 |
T |
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| Q |
195 |
aaaagctcttgaaagctagaagctaatttaacctatg |
231 |
Q |
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| T |
6590667 |
aaaagctcttgaaagatggaaactattttaacctatg |
6590631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 21836060 - 21835976
Alignment:
| Q |
145 |
cttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaagctaatttaaccta |
229 |
Q |
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| T |
21836060 |
cttataaaggcctcttttcaagtaaaagaaacagataattgtctcatttgagaagctctcataagatagaatctattttaaccta |
21835976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 51170558 - 51170520
Alignment:
| Q |
159 |
ttttcaagtaaaagtaacaaataattgtctcatttgaaa |
197 |
Q |
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| T |
51170558 |
ttttcaagtaaaagaaacaaataattgtctcaattgaaa |
51170520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 234809 - 234876
Alignment:
| Q |
127 |
tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa |
197 |
Q |
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||||||||||| || || |||||||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
234809 |
tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa |
234876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 711220 - 711287
Alignment:
| Q |
127 |
tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa |
197 |
Q |
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||||||||||| || || |||||||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
711220 |
tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa |
711287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 748432 - 748499
Alignment:
| Q |
127 |
tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa |
197 |
Q |
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||||||||||| || || |||||||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
748432 |
tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa |
748499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 872327 - 872394
Alignment:
| Q |
127 |
tagataaacacttacaagcttataaaggcttcttttcaagtaaaagtaacaaataattgtctcatttgaaa |
197 |
Q |
| |
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||||||||||| || || |||||||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
872327 |
tagataaacacctaaaaacttataaatgctt---ttcaagtaaaagaaacaaataattgtctcaattgaaa |
872394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 37046669 - 37046612
Alignment:
| Q |
167 |
taaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaagctaatttaa |
225 |
Q |
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| T |
37046669 |
taaaagaaaaaaataattgtatcatttgagaagctcttgaaagct-gaaactaatttaa |
37046612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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