View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_71 (Length: 236)
Name: NF16780_low_71
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_71 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11702038 - 11701817
Alignment:
| Q |
1 |
acgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702038 |
acgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagt |
11701939 |
T |
|
| Q |
101 |
agagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701938 |
agagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattc |
11701839 |
T |
|
| Q |
201 |
cataatatgataccctctctgc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
11701838 |
cataatatgataccctctctgc |
11701817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 11798063 - 11797861
Alignment:
| Q |
20 |
atatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccc |
119 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
120 |
aaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
219 |
Q |
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||||||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11797864 |
T |
|
| Q |
220 |
tgc |
222 |
Q |
| |
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||| |
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| T |
11797863 |
tgc |
11797861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 11676136 - 11675924
Alignment:
| Q |
10 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
109 |
Q |
| |
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||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11676136 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11676037 |
T |
|
| Q |
110 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatg |
209 |
Q |
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||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11676036 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatg |
11675937 |
T |
|
| Q |
210 |
ataccctctctgc |
222 |
Q |
| |
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||||||||||||| |
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| T |
11675936 |
ataccctctctgc |
11675924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 11684415 - 11684203
Alignment:
| Q |
10 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
109 |
Q |
| |
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||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11684415 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11684316 |
T |
|
| Q |
110 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatg |
209 |
Q |
| |
|
||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11684315 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatg |
11684216 |
T |
|
| Q |
210 |
ataccctctctgc |
222 |
Q |
| |
|
||||||||||||| |
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| T |
11684215 |
ataccctctctgc |
11684203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 11696228 - 11696020
Alignment:
| Q |
14 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
113 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11696228 |
accaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
11696129 |
T |
|
| Q |
114 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgatac |
213 |
Q |
| |
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||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11696128 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgc |
11696029 |
T |
|
| Q |
214 |
cctctctgc |
222 |
Q |
| |
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||||||||| |
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| T |
11696028 |
cctctctgc |
11696020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 11779218 - 11779035
Alignment:
| Q |
3 |
gaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtag |
102 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||| || |
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|
| T |
11779218 |
gaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggag |
11779119 |
T |
|
| Q |
103 |
agaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
186 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11779118 |
agaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 16681 - 16461
Alignment:
| Q |
3 |
gaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtag |
102 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16681 |
gaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtag |
16582 |
T |
|
| Q |
103 |
agaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattcca |
202 |
Q |
| |
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|||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || | ||| ||| |
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| T |
16581 |
agaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatccca |
16482 |
T |
|
| Q |
203 |
taatatgataccctctctgct |
223 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
16481 |
atatatgatatcctctctgct |
16461 |
T |
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