View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_75 (Length: 227)
Name: NF16780_low_75
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 38134502 - 38134316
Alignment:
| Q |
1 |
gtgtgtgtgtttaggagattttagaaagagcttatttaatgacatgagtcatgaaaagttgtacaagtgttagatgatagggtcataagtttctttaata |
100 |
Q |
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| T |
38134502 |
gtgtgtgtgtttaggagattttagaaagagcttatttaatgacatgagtcatgaaaagttgtacaagtgttagatgatagggtcattagtttctttaata |
38134403 |
T |
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| Q |
101 |
taactaattttcacaagttgttttctgcttctacaaaattactgtcattctctctttgattcttgaaatagattatatttatccgat |
187 |
Q |
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| T |
38134402 |
taactaattttcacaagttgttttctgcttctacaaaattactgtcattctctctttgattcttgaaatagattatatttatccgat |
38134316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 38143456 - 38143345
Alignment:
| Q |
65 |
aagtgttagatgatagggtcataagtttctttaatataactaattttcacaagttgttttctgcttctacaaaa--ttactgtcattctctctttgattc |
162 |
Q |
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| T |
38143456 |
aagtgttagatgatatgttcataagttg-tttaata--acttattttcaca-gttgttttctgtttgtacaaaaatttactgtgattctctctttggttg |
38143361 |
T |
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| Q |
163 |
ttgaaatagattatat |
178 |
Q |
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| T |
38143360 |
ttgaaatggatcatat |
38143345 |
T |
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