View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16780_low_78 (Length: 218)
Name: NF16780_low_78
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 2470232 - 2470425
Alignment:
| Q |
17 |
attaagtgatttccctttctaatttcctatctctttctctctcactctatctccctgaagagatcttggatagaataatatatcatctacaacgatgaat |
116 |
Q |
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| T |
2470232 |
attaagtgatttccctttcgtatttcctatctctttctctctcactctatctccctgaagagatcttggatagaataatatatcatctgcaacgattaat |
2470331 |
T |
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| Q |
117 |
tatcgaatcaaatctctaattatttttgagttggtttctttcatattttttcttacaagagttgcttcggttcattctcatccctagtataatc |
210 |
Q |
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| T |
2470332 |
tatcgaatcaaatctctaattatttttgagttggtttctttcatattttttcttaaaagagttgcttccgttcattctcatccctaatataatc |
2470425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 46573669 - 46573631
Alignment:
| Q |
114 |
aattatcgaatcaaatctctaattatttttgagttggtt |
152 |
Q |
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| T |
46573669 |
aattatcgaatcgaatctcgaattatttttgagttggtt |
46573631 |
T |
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