View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16780_low_8 (Length: 532)
Name: NF16780_low_8
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16780_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Complemental strand, 50364398 - 50363891
Alignment:
| Q |
12 |
tgagatgaataacatactgattgtgagtttagtgatgttcaagcaatgtgtcacaaggttggtttagacaatacttcgaagatcatagcaaccttagtgg |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
50364398 |
tgagttgaataacatactgattgtgagtttagtgatgttcaagcaatgtgtcacaaggttggtttagataatacttcgaagatcatagcgaccttagtgg |
50364299 |
T |
|
| Q |
112 |
ttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaataccatatt |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50364298 |
ttgaagtgggtatcttagctccattgataatgtgggatat--ttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaataccagatc |
50364201 |
T |
|
| Q |
212 |
acaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttggcataaat |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50364200 |
acaacatctatttttatttatctacaagtttccaagcagacgtttgaaagtccagcctcctgctccactcgaacaacttgtgaggtgtgttgacataaat |
50364101 |
T |
|
| Q |
312 |
gggatgtggatggcatggttctcaacatggatggaagtgctcttactaatcatgggtttggtgacttagtgcgtaaccatgatggaacatttcaattttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50364100 |
gggatgtggatggcatggttctcaacatggatggaagtgctcttactaatcatgggtttggtgacttagtgcgtaaccatgatggaacatttcaattttg |
50364001 |
T |
|
| Q |
412 |
tttttatgggattatatgtttgtctaatattctccatg------tacgggtgtttttactggggcatcaaactctgctggcagattggattgaggaaaat |
505 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50364000 |
tttctatgggattatatgtttgtctaatattctccatgtggaaatacgagcatttttact-gggcatcaaactctgttggcagattggattgaggaaaat |
50363902 |
T |
|
| Q |
506 |
aacgtgttttt |
516 |
Q |
| |
|
|| |||||||| |
|
|
| T |
50363901 |
aatgtgttttt |
50363891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 31 - 449
Target Start/End: Original strand, 10794856 - 10795281
Alignment:
| Q |
31 |
attgtgagtttagtgatgttcaagcaatgtgtcacaaggttggtttagacaatacttcgaagatcatagcaaccttagtggttgaagtgggtatcttaac |
130 |
Q |
| |
|
|||||| ||||||||||| || | |||| ||||||||||||| | ||||||||||||| |||||| |||| || ||||||| |||||||||||||||| | |
|
|
| T |
10794856 |
attgtgggtttagtgatgctctatcaatttgtcacaaggttgttctagacaatacttcaaagatcctagcgacattagtggatgaagtgggtatcttagc |
10794955 |
T |
|
| Q |
131 |
tccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaataccatattacaacatctatctttattt |
230 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || || | |||| ||| | || | |||||||||||||| | |
|
|
| T |
10794956 |
tccattgataatgtgg--aatatttggatctctcgcaacaaatttatttttaagggaacaactcctatgaagtactagatcataacatctatctttactc |
10795053 |
T |
|
| Q |
231 |
atctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttggcataaatgggatgtggatggcatggt |
330 |
Q |
| |
|
| |||||||||||||||||| |||| | |||| | ||||| |||| |||||||||| |||||||||||||| ||||| |||||| ||||| |||| | |
|
|
| T |
10795054 |
agctacaagtttccaagcaggcattgggaagtccaacctcccactcccatcgaacaactcgtgaggtgtgttggaataaaggggatgaggatgccatgat |
10795153 |
T |
|
| Q |
331 |
tctcaacatggatggaagtgctcttactaatc------at---gggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgtttttatggg |
421 |
Q |
| |
|
|||||| | |||||||||||| |||||||| || |||||| | | ||| |||| ||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
10795154 |
tctcaatgtagatggaagtgcttatactaatccaaggaatggagggtttagcggcttggtgcttaaccatgatggaacctttcaatttcgtttctatggg |
10795253 |
T |
|
| Q |
422 |
attatatgtttgtctaatattctccatg |
449 |
Q |
| |
|
| | || ||||||| |||||||| |||| |
|
|
| T |
10795254 |
agtgtaggtttgtccaatattcttcatg |
10795281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 449
Target Start/End: Original strand, 15581406 - 15581582
Alignment:
| Q |
282 |
gaacaacttgtgaggtgtgttggcataaatgggatgtggatggcatggttctcaacatggatggaagtgctcttactaatcatggg---------tttgg |
372 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||| |||| ||| ||||||| |||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
15581406 |
gaacaacctgtgaggtgtgttggaataaaggggatggagatgcaatgattctcaatgtggacggaagtgctcttactaatccagggaaggaaggctttgg |
15581505 |
T |
|
| Q |
373 |
tgacttagtgcgtaaccatgatggaacatttcaattttgtttttatgggattatatgtttgtctaatattctccatg |
449 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||||||| |||| ||||||| | || |||||||||||||||| |||| |
|
|
| T |
15581506 |
tggcttggtgcgtaagcatgatggaacatttcaatttggtttctatgggagtgtaggtttgtctaatattcttcatg |
15581582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 15581196 - 15581286
Alignment:
| Q |
38 |
gtttagtgatgttcaagcaatgtgtcacaaggttggtttagacaatacttcgaagatcatagcaaccttagtggttgaagtgggtatctta |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||| ||||| |||||||| |||||| || |||||| |
|
|
| T |
15581196 |
gtttagtgatgttcaagaaatgtgtcacaaggttggtctagagaatacttcaaagatctcagcaatcttagtggctgaagtaggcatctta |
15581286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 34 - 449
Target Start/End: Original strand, 50076228 - 50076650
Alignment:
| Q |
34 |
gtgagtttagtgatgttcaagcaatgtgtcacaaggttggtttagacaatacttcgaagatcatagcaaccttagtggttgaagtgggtatcttaactcc |
133 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||| | ||||||||||||| |||||| |||| || ||||||| |||||||||||||||| |||| |
|
|
| T |
50076228 |
gtgagtttagtgatgttctatcaatttgtcacaaggttgttctagacaatacttcaaagatcctagcgacattagtggatgaagtgggtatcttagctcc |
50076327 |
T |
|
| Q |
134 |
attgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaataccatattacaacatctatctttatttatc |
233 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||| ||| || || || | |||| ||| | || | |||||||||||||| | | | |
|
|
| T |
50076328 |
attgataatgtgg--aatatttgaatctctcgcaacaaatttatttttaaggaaacaactcctatgaagtactagatcataacatctatctttactcagc |
50076425 |
T |
|
| Q |
234 |
tacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttggcataaatgggatgtggatggcatggttct |
333 |
Q |
| |
|
||||||||||||||||| |||| | |||| | ||||| ||| |||||||||| ||||| |||||||| ||||| |||||| ||||| |||| |||| |
|
|
| T |
50076426 |
tacaagtttccaagcaggcattgggaagtccaacctcccactctcatcgaacaactcgtgagatgtgttggaataaaggggatgaggatgccatgattct |
50076525 |
T |
|
| Q |
334 |
caacatggatggaagtgctcttactaatc------at---gggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgtttttatgggatt |
424 |
Q |
| |
|
||| | |||||||||||| |||||||| || |||||| | | ||| |||| ||||||||||||||| ||||||||| |||| ||||||| | |
|
|
| T |
50076526 |
caatgtagatggaagtgcttatactaatccaaggaatggagggtttagcggcttggtgcttaaccatgatggaacctttcaatttggtttctatgggagt |
50076625 |
T |
|
| Q |
425 |
atatgtttgtctaatattctccatg |
449 |
Q |
| |
|
|| ||||||| |||||||| |||| |
|
|
| T |
50076626 |
gtaggtttgtccaatattcttcatg |
50076650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 47748689 - 47748606
Alignment:
| Q |
366 |
ggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgtttttatgggattatatgtttgtctaatattctccatg |
449 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||||| |||| ||||||| | || ||||||| ||||||||||||| |
|
|
| T |
47748689 |
ggtttggtggcttggtgcgtaaccatgatggaacattttaatttggtttctatgggagtgtaggtttgtccaatattctccatg |
47748606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 35 - 449
Target Start/End: Original strand, 41405390 - 41405805
Alignment:
| Q |
35 |
tgagtttagtgatgttcaagcaatgtgtcacaaggttggtttagacaatacttcgaagatcatagcaaccttagtggttgaagtgggtatcttaactcca |
134 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| || ||||||||||||| ||| | |
|
|
| T |
41405390 |
tgagtttagggatgttcaagcaatgtgtgagaaggctggtctagacaatacttcaaagatcctcataaccttagtggatggagtgggtatcttagctcta |
41405489 |
T |
|
| Q |
135 |
ttgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaaataccatattacaacatctatctttatttatct |
234 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| || | |||||||| ||||| | | || |
|
|
| T |
41405490 |
ttgataacgtggaatat--ttggatctctcgcaacaaatttatttttaagggaataactcatgtgaagtaccacatcataacatctaactttactcaact |
41405587 |
T |
|
| Q |
235 |
acaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgaggtgtgttggcataaatgggatgtggatggcatggttctc |
334 |
Q |
| |
|
||| |||||||||||||| ||| || | | |||| ||| |||||||| |||||||||||||||| ||||| ||||| ||||| |||| ||||| |
|
|
| T |
41405588 |
acaggtttccaagcagacgttttgaaatccaacctc-----cca-tcgaacaatttgtgaggtgtgttggaataaagaggatgaggatgacatgattctc |
41405681 |
T |
|
| Q |
335 |
aacatggatggaagtgctcttactaatc---------atgggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgtttttatgggatta |
425 |
Q |
| |
|
|| | |||||||||||| ||||||||| |||||||||| ||| |||| |||||||||||| |||||||||||| |||| ||||| | | |
|
|
| T |
41405682 |
aatgtagatggaagtgcttttactaatctagggaagacggggtttggtggcttggtgcataaccatgatgggacatttcaatttggtttctatggaagtg |
41405781 |
T |
|
| Q |
426 |
tatgtttgtctaatattctccatg |
449 |
Q |
| |
|
|| ||||||| ||||||||||||| |
|
|
| T |
41405782 |
taggtttgtccaatattctccatg |
41405805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 7219742 - 7219693
Alignment:
| Q |
365 |
gggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgttt |
414 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7219742 |
gggtttggtggcttagtgcgtaaccatgatggaacatttcaatttggttt |
7219693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 102 - 295
Target Start/End: Original strand, 25584082 - 25584273
Alignment:
| Q |
102 |
accttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttatttttgagggaataagtcatgtgaa |
201 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||||||||||| | |||| |||||||||||||| |||||||| ||| ||||||||| | |||||| |
|
|
| T |
25584082 |
accttagcggtcgaagtgggtatcttagctccattgataatgttgaatat--ttggatctctcgcagtaaatttatctttcagggaataacttttgtgaa |
25584179 |
T |
|
| Q |
202 |
ataccatattacaacatctatctttatttatctacaagtttccaagcagacatttgaaagtttagcctccagctccactcgaacaacttgtgag |
295 |
Q |
| |
|
||||| || ||||||||||| |||| || ||||||||||| |||||||| |||| |||| | |||| | |||| || ||||||||||||| |
|
|
| T |
25584180 |
gtaccagatcacaacatctatatttacttggctacaagtttcgaagcagacgtttggaagtccaacctctaactcccatcaaacaacttgtgag |
25584273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 445
Target Start/End: Complemental strand, 8865499 - 8865420
Alignment:
| Q |
366 |
ggtttggtgacttagtgcgtaaccatgatggaacatttcaattttgtttttatgggattatatgtttgtctaatattctc |
445 |
Q |
| |
|
||||||||| ||| || ||||||||||||| ||||||| ||||| |||| ||||||| | || ||||||| ||||||||| |
|
|
| T |
8865499 |
ggtttggtggcttggtacgtaaccatgatgaaacatttaaatttggtttctatgggagtgtaggtttgtccaatattctc |
8865420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 34540490 - 34540598
Alignment:
| Q |
78 |
gacaatacttcgaagatcatagcaaccttagtggttgaagtgggtatcttaactccattgataatgtgggatatatttggatctctcgcaacaaatttat |
177 |
Q |
| |
|
||||||| ||| ||||| |||||| |||||||| |||||||| ||||||| ||| ||||||||| | |||| |||||||||||| ||||||||||| |
|
|
| T |
34540490 |
gacaatatttcagagatcctagcaatcttagtgggtgaagtggatatcttagctcggttgataatgaagaatat--ttggatctctcgtaacaaatttat |
34540587 |
T |
|
| Q |
178 |
ttttgagggaa |
188 |
Q |
| |
|
|||| |||||| |
|
|
| T |
34540588 |
tttttagggaa |
34540598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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