View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16780_low_85 (Length: 203)

Name: NF16780_low_85
Description: NF16780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16780_low_85
NF16780_low_85
[»] chr1 (2 HSPs)
chr1 (71-189)||(15381559-15381677)
chr1 (14-47)||(15381520-15381553)
[»] chr7 (7 HSPs)
chr7 (97-162)||(24149787-24149852)
chr7 (94-145)||(24131187-24131238)
chr7 (97-147)||(24231166-24231216)
chr7 (90-147)||(24152993-24153050)
chr7 (97-160)||(24159861-24159924)
chr7 (97-147)||(24158253-24158303)
chr7 (94-126)||(24239612-24239644)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 15381559 - 15381677
Alignment:
Q  71 agtaacatattttgattgcatggtgtagggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaagcagtctcagcctgttgtggagc 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15381559 agtaacatattttgattgcatggtgtagggtctcagcatactaaaagcttcattgaccacaacttctactttgacaaacagtctcagcctgttgtggagc 15381658  T
Q  171 aattcaagaatgaacaaag 189  Q
    |||||||||||||| ||||    
T  15381659 aattcaagaatgaataaag 15381677  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 15381520 - 15381553
Alignment:
Q  14 tgaaatgaaacttcctcatttagtatagcttttc 47  Q
    ||||||||||||||||||||||||||||||||||    
T  15381520 tgaaatgaaacttcctcatttagtatagcttttc 15381553  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 24149852 - 24149787
Alignment:
Q  97 agggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaagcagtctcagcctgt 162  Q
    |||||||||| ||  |||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  24149852 agggtctcaggattttaaaagcttcattgaccacaacttctactttgacaaatggtctcagcctgt 24149787  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 24131238 - 24131187
Alignment:
Q  94 tgtagggtctcagcatactaaaagcttcattgaccacaacttctgctttgac 145  Q
    ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||    
T  24131238 tgtagggtctcagcatactaaaatcttcactgacctcaacatctgctttgac 24131187  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 24231216 - 24231166
Alignment:
Q  97 agggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaa 147  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||||||    
T  24231216 agggtctcagcatacttaaagcttcactgacctcagcttctgctttgacaa 24231166  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 24153050 - 24152993
Alignment:
Q  90 atggtgtagggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaa 147  Q
    |||||| |||||||||||||| |||||||||||| ||||||||| | |||||| ||||    
T  24153050 atggtgcagggtctcagcatattaaaagcttcatcgaccacaacatgtgctttaacaa 24152993  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 24159924 - 24159861
Alignment:
Q  97 agggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaagcagtctcagcct 160  Q
    ||||||||||||| || ||||||||||||||| |||| ||| ||||||||| | |||| |||||    
T  24159924 agggtctcagcattctgaaagcttcattgacctcaacatcttctttgacaaacggtcttagcct 24159861  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 24158303 - 24158253
Alignment:
Q  97 agggtctcagcatactaaaagcttcattgaccacaacttctgctttgacaa 147  Q
    |||||||||||||||||||||| ||||||||| |||| ||| |||| ||||    
T  24158303 agggtctcagcatactaaaagcgtcattgacctcaacatcttctttaacaa 24158253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 24239612 - 24239644
Alignment:
Q  94 tgtagggtctcagcatactaaaagcttcattga 126  Q
    |||||||||||||||||||||||||||| ||||    
T  24239612 tgtagggtctcagcatactaaaagcttctttga 24239644  T

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