View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16781_high_1 (Length: 831)
Name: NF16781_high_1
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16781_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 197 - 815
Target Start/End: Original strand, 41132637 - 41133256
Alignment:
| Q |
197 |
tgtcacaatgttagaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttcagatgttcaagctgcctt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132637 |
tgtcacaatgttagaaagccatactaaaaccatcttttctctaatatttttgccaccattcactaattctttaaattggttcagatgttcaagctgcctt |
41132736 |
T |
|
| Q |
297 |
ctataaaagctgccgaaattcctaatcatttcaaagtctcactatacaccaccgagagaattcgataattaaaaaagagatgatttacagtttcaaggtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41132737 |
ctataaaagctgccgaaattcctaatcatttcaaagtctcgctatacaccaccgagagaattcgacaattaaaaaagagatgatttacagtttcaaggtt |
41132836 |
T |
|
| Q |
397 |
cccacatcctatttcgttgacaagtgaccagacgctcgaatgtagtatttaaacgtagcattacattcgtactctataaccctaagcattacattacatg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132837 |
cccacatcctatttcgttgacaagtgaccagacgctcgaatgtagtatttaaacgtagcattacattcgtactctataaccctaagcattacattacatg |
41132936 |
T |
|
| Q |
497 |
atagaaaaactacggctttgcgatcagagacatagacacaattagccgaactatgatcaattgtttgtgttcttgtgtacgcttacatatctgtttaagt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41132937 |
atagaaaaactacggctttgcgatcagagacatagacacaattaaccgaactatgatcaattgtttgtgtttttgtgtacgcttacatatctgtttaagt |
41133036 |
T |
|
| Q |
597 |
tagaggcgg-nnnnnnnnnnnnctagtaacaaaacacgtttctattaataatattgaaaaataaatgtgaaaaccataaaatttacttaccattaagaag |
695 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41133037 |
tagaggcggtatttttttttttctagtaacaaaacacgtttctattaataatattgaaaaataaatgtgaaaaccataaaatttacttaccgttaagaag |
41133136 |
T |
|
| Q |
696 |
gcttcaaaatcaacatcagttggaaaatcattgcctgattcattcaagatccccctaatctcatcttcactgtacatatctatgaatgcctttagcttca |
795 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41133137 |
gcttcaaaatcaacatcagttgtaaaatcattgcctgattcattcaagatccccctaatctcatcttcactgtacatatctacgaatgcctttagcttca |
41133236 |
T |
|
| Q |
796 |
tcattaaagatggtaaatct |
815 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41133237 |
tcattaaagatggtaaatct |
41133256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 41132312 - 41132500
Alignment:
| Q |
11 |
catcatcaagatagctgtttatgtgagcaacatagaagcccttttctgatccactaatcgtgtgaagaagggtagttatgctttcgttaaggaatgatga |
110 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132312 |
catcaccaaggtagctgtttatgtgagcaacatagaagcccttttctgatccactaatcgtgtgaagaagggtagttatgctttcgttaaggaatgatga |
41132411 |
T |
|
| Q |
111 |
ggagtgcttcaatccaccctgtttctttgtagctaggcttcgcaaattcaaatatacctgcatgaaaaatgtgttatagattaaaatgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41132412 |
ggagtgcttcaatccaccctgtttctttgtagctaggcttcgcaaattcaaatatacctgcatgaaaaatgtgttatagattaaaatgt |
41132500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Original strand, 29148053 - 29148092
Alignment:
| Q |
363 |
aattaaaaaagagatgatttacagtttcaaggttcccaca |
402 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
29148053 |
aattaaaaaagtgatgatttacagtttcaaggtttccaca |
29148092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University