View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16781_low_2 (Length: 431)

Name: NF16781_low_2
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16781_low_2
NF16781_low_2
[»] chr1 (8 HSPs)
chr1 (180-391)||(18705667-18705878)
chr1 (173-283)||(9908133-9908242)
chr1 (173-245)||(20226773-20226844)
chr1 (179-245)||(29849947-29850011)
chr1 (312-391)||(12436186-12436265)
chr1 (236-391)||(50038529-50038685)
chr1 (221-260)||(2427330-2427369)
chr1 (209-260)||(26231106-26231156)
[»] chr7 (9 HSPs)
chr7 (173-392)||(41830167-41830387)
chr7 (220-391)||(41832574-41832745)
chr7 (221-391)||(8083389-8083559)
chr7 (221-378)||(25432047-25432205)
chr7 (173-234)||(34510821-34510882)
chr7 (173-283)||(36647438-36647549)
chr7 (247-301)||(23613779-23613833)
chr7 (221-283)||(7737387-7737449)
chr7 (260-301)||(23613725-23613766)
[»] chr8 (11 HSPs)
chr8 (173-391)||(7277701-7277919)
chr8 (220-391)||(7275143-7275314)
chr8 (208-390)||(13856639-13856822)
chr8 (228-369)||(3567495-3567639)
chr8 (185-283)||(4676237-4676334)
chr8 (188-262)||(26174363-26174437)
chr8 (188-242)||(35416056-35416110)
chr8 (228-283)||(29864498-29864553)
chr8 (173-230)||(39327-39385)
chr8 (220-250)||(12464815-12464845)
chr8 (221-258)||(5690859-5690896)
[»] chr6 (9 HSPs)
chr6 (185-392)||(8655791-8655992)
chr6 (221-392)||(30689634-30689805)
chr6 (173-310)||(6825460-6825597)
chr6 (185-301)||(24249778-24249894)
chr6 (221-310)||(6823035-6823124)
chr6 (173-242)||(787416-787486)
chr6 (173-278)||(23343889-23343991)
chr6 (221-298)||(4555733-4555810)
chr6 (228-345)||(1136235-1136353)
[»] chr2 (6 HSPs)
chr2 (173-391)||(24038231-24038450)
chr2 (221-391)||(31180186-31180355)
chr2 (220-391)||(31269462-31269632)
chr2 (221-391)||(24039426-24039596)
chr2 (221-369)||(36402684-36402832)
chr2 (209-283)||(36316272-36316346)
[»] chr5 (16 HSPs)
chr5 (173-392)||(21254115-21254334)
chr5 (202-391)||(26873142-26873331)
chr5 (221-391)||(21256588-21256758)
chr5 (252-393)||(31339169-31339311)
chr5 (173-258)||(41951682-41951768)
chr5 (173-255)||(35309098-35309181)
chr5 (222-305)||(4730657-4730741)
chr5 (221-283)||(43233901-43233963)
chr5 (173-279)||(30518636-30518743)
chr5 (173-279)||(30558976-30559083)
chr5 (295-368)||(15531461-15531535)
chr5 (175-288)||(16685909-16686022)
chr5 (318-368)||(15531594-15531644)
chr5 (221-258)||(41949333-41949370)
chr5 (173-243)||(31692726-31692796)
chr5 (227-300)||(15543694-15543767)
[»] scaffold0525 (1 HSPs)
scaffold0525 (221-391)||(2028-2198)
[»] scaffold0862 (1 HSPs)
scaffold0862 (220-391)||(190-361)
[»] chr4 (10 HSPs)
chr4 (221-391)||(2546988-2547158)
chr4 (173-297)||(5440887-5441013)
chr4 (221-335)||(5444744-5444859)
chr4 (221-301)||(35783779-35783859)
chr4 (237-394)||(20880054-20880212)
chr4 (173-245)||(55851943-55852016)
chr4 (221-283)||(27510483-27510545)
chr4 (269-391)||(7785326-7785451)
chr4 (318-391)||(20879962-20880035)
chr4 (221-301)||(4167574-4167654)
[»] scaffold0023 (1 HSPs)
scaffold0023 (221-392)||(111544-111715)
[»] scaffold0251 (1 HSPs)
scaffold0251 (255-393)||(4581-4719)
[»] chr3 (17 HSPs)
chr3 (221-391)||(10018777-10018948)
chr3 (221-391)||(10256091-10256262)
chr3 (221-391)||(10179974-10180145)
chr3 (221-355)||(10123317-10123452)
chr3 (209-391)||(19954439-19954622)
chr3 (221-301)||(782838-782918)
chr3 (221-383)||(8504202-8504365)
chr3 (173-234)||(52737780-52737842)
chr3 (221-335)||(10514351-10514466)
chr3 (221-335)||(10661756-10661871)
chr3 (236-394)||(10744725-10744885)
chr3 (221-335)||(10511027-10511141)
chr3 (173-243)||(20868825-20868895)
chr3 (180-225)||(4602399-4602444)
chr3 (221-301)||(10613346-10613426)
chr3 (221-258)||(17743104-17743141)
chr3 (221-258)||(19044424-19044461)
[»] scaffold0655 (1 HSPs)
scaffold0655 (222-391)||(612-782)
[»] scaffold0001 (2 HSPs)
scaffold0001 (173-310)||(146672-146809)
scaffold0001 (221-310)||(144661-144750)
[»] scaffold0959 (1 HSPs)
scaffold0959 (221-271)||(408-458)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 180 - 391
Target Start/End: Original strand, 18705667 - 18705878
Alignment:
Q  180 aaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctatt 279  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18705667 aaaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctatt 18705766  T
Q  280 gatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatct 379  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18705767 gatgaaaatagaatattacaaaatgagaaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgctactaatct 18705866  T
Q  380 atatctctaata 391  Q
    ||||||||||||    
T  18705867 atatctctaata 18705878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 9908133 - 9908242
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactct 272  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||   |||||| ||||||||||| | | | |||    
T  9908133 gcagcggaaaatttcttcaaggtggataccagattagctctgataccatgttaggaaacatgatatcca-acaaggaatgagagaaaactcaaataatct 9908231  T
Q  273 ttctattgatg 283  Q
    || ||||||||    
T  9908232 ttgtattgatg 9908242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 20226773 - 20226844
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatgga 245  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  20226773 gcagcggaaaat-ccttcaaggaggataccagattagctctgataccatgttaggaaacacggcattcatgga 20226844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 29849947 - 29850011
Alignment:
Q  179 gaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatgga 245  Q
    |||||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||||    
T  29849947 gaaaattccttcaaggtggatacca--tttgctctgataccatgttatgaaacatggcatccatgga 29850011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 12436265 - 12436186
Alignment:
Q  312 taccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||| |||||||||||||||| || ||||||||||||| | || ||| |||||||||| ||||||||||||||| ||||    
T  12436265 tacccactaatggggtggttactagctatttatactactatttactagaactaatatgccactaatctatatctccaata 12436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 391
Target Start/End: Complemental strand, 50038685 - 50038529
Alignment:
Q  236 catccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgaga-aaagtaccctctaatggggtggttaca 334  Q
    |||||||| |||||| ||||||||| | |   ||||||| |||||||| | || |||  ||||||| ||||  ||||| ||| |||||||||| ||||||    
T  50038685 catccatgaaaggaacgagagaaaagtgaatgactctttgtattgatgaagatagaaagttacaaa-tgagtgaaagttcccactaatggggtagttaca 50038587  T
Q  335 agttatttatactactctctattaggactaatatgctactaatc-tatatctctaata 391  Q
    || ||||| |  |||| ||||||||||||||||| | ||||||| |||||||||||||    
T  50038586 agctatttttggtactatctattaggactaatataccactaatcttatatctctaata 50038529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 2427369 - 2427330
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaa 260  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaaa 2427330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 26231106 - 26231156
Alignment:
Q  209 gctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaa 260  Q
    |||||||||| |||||| |||||||||||||||||| | |||||||||||||    
T  26231106 gctctgatactatgttatgaaacatggcatccatgg-atgaaggagagaaaa 26231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 173 - 392
Target Start/End: Complemental strand, 41830387 - 41830167
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| |||||||||||||||||||  || ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  41830387 gcagcggaaaatatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactc 41830288  T
Q  272 tttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgct 371  Q
    |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41830287 tttctattgatgtaaattgaatattacaaaatgagaaaagttccctctaatggggtggttacaagttatttatactactctctactaggactaatatgct 41830188  T
Q  372 actaatctatatctctaatac 392  Q
    |||||||||||||||||||||    
T  41830187 actaatctatatctctaatac 41830167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 220 - 391
Target Start/End: Complemental strand, 41832745 - 41832574
Alignment:
Q  220 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctct 319  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  41832745 atgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaaatgagaaaagtaccctct 41832646  T
Q  320 aatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41832645 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 41832574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 8083389 - 8083559
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaaatgacaaaagttccctcta 8083488  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  8083489 atggggtggttagaagttatttatactactctttactaggactaatatgctactaatctatatctttaata 8083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 25432205 - 25432047
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaact-ctttctattgatggaaatggaatattacaaaatgaga-aaagtaccctc 318  Q
    ||||| |||||||||||||||||||||||| ||||||||  ||  ||| | |||| ||||||||||||| ||||||||| || ||||  ||||| ||| |    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaa-tgagtgaaagtgcccac 25432107  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatgctactaatc 378  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||| | |||||||    
T  25432106 taatggggtggttacaagctatttatagtactatctattaggactaatataccactaatc 25432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 34510882 - 34510821
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatg 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34510882 gcagcggaaaattccttcaaggtggataccagattagctctgataccatgttaggaaacatg 34510821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 36647438 - 36647549
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| ||||||||| || |||||||||| ||||||||||||| |||| |||||||  |||||  ||| ||| ||||||||||| ||| | |     
T  36647438 gcagcggaaaatatccttcaagatgaataccagattagctctgataccatattagaaaacatgatatccaatgaaagaatgagagaaaacttagagaata 36647537  T
Q  272 tttctattgatg 283  Q
    ||||||||||||    
T  36647538 tttctattgatg 36647549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 23613833 - 23613779
Alignment:
Q  247 ggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  23613833 ggaagtagagaaaactaacaaactctttttattgatggaaatgaaatattacaaa 23613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 7737449 - 7737387
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    ||||||||||||||  |||||  ||||||| ||||||||||||||| | ||||||||||||||    
T  7737449 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatg 7737387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 23613766 - 23613725
Alignment:
Q  260 actaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    ||||| ||||||||| |||||||||||||| |||||||||||    
T  23613766 actaacaaactctttttattgatggaaatgaaatattacaaa 23613725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 173 - 391
Target Start/End: Original strand, 7277701 - 7277919
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactct 272  Q
    ||||||||||| |  ||||||||||||||||     ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  7277701 gcagcggaaaaattgttcaaggtggataccaatcatgctctgataccatgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactct 7277800  T
Q  273 ttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgcta 372  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7277801 ttctattgatgaaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctactaggactaatatgcta 7277900  T
Q  373 ctaatctatatctctaata 391  Q
     ||||||||||||||||||    
T  7277901 ataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 220 - 391
Target Start/End: Original strand, 7275143 - 7275314
Alignment:
Q  220 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctct 319  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7275143 atgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctct 7275242  T
Q  320 aatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7275243 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 7275314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 208 - 390
Target Start/End: Complemental strand, 13856822 - 13856639
Alignment:
Q  208 cgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgaga 307  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||  ||| |||| ||||||| ||||||||||| |||||| ||||     
T  13856822 cgctctgataccatgttatgaaacatgacatccatggaaagaaggagagaaaactaacgaacactttgtattgatagaaatggaatactacaaa-tgagt 13856724  T
Q  308 -aaagta-ccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaat 390  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13856723 gaaagtaaccctctaatggggtggttacaagttatttatactactctctactaggactaatatgccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 369
Target Start/End: Original strand, 3567495 - 3567639
Alignment:
Q  228 aaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag---aaaagta-ccctctaatg 323  Q
    ||||||| ||||| |||||||||||| ||||| |||| ||||||||| |||||||| |||||||||||||| |||||||   ||||||| |||||||||     
T  3567495 aaacatgacatccgtggaaggaaggaaagaaatctaacaaactctttgtattgatgaaaatggaatattac-aaatgagtgaaaaagtatccctctaata 3567593  T
Q  324 gggtggttacaagttatttatactactctctattaggactaatatg 369  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  3567594 gggtggttacaggttatttatactactctctgctaggactaatatg 3567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 4676334 - 4676237
Alignment:
Q  185 tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||||||  |||||  ||||||| ||||||||||||||| | | ||||||||||||    
T  4676334 tccttcaaggtggataccaggttagctctgataccatattaggaaacatgatatcca-cgaaggaatgagagaaaactaagagaatatttctattgatg 4676237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 26174437 - 26174363
Alignment:
Q  188 ttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaact 262  Q
    |||||||||||||||| ||| | |||||||||||||||| |||||||  ||||| |||||||| |||||||||||    
T  26174437 ttcaaggtggataccatatttgttctgataccatgttagtaaacatgatatccaaggaaggaatgagagaaaact 26174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 35416056 - 35416110
Alignment:
Q  188 ttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccat 242  Q
    ||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||    
T  35416056 ttcaaggtggataccaattatgctctgataccatgttaagaaacatggcatccat 35416110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 29864498 - 29864553
Alignment:
Q  228 aaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    ||||||||||||||| |||| ||  |||||||| ||| ||||||||||||||||||    
T  29864498 aaacatggcatccatagaagaaaatagagaaaattaacaaactctttctattgatg 29864553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 39385 - 39327
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaa 230  Q
    |||||||||||| |||||||||||||||| | |||| ||||||||| ||||||| ||||    
T  39385 gcagcggaaaatatccttcaaggtggatatcggattagctctgatatcatgttaagaaa 39327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 12464845 - 12464815
Alignment:
Q  220 atgttaggaaacatggcatccatggaaggaa 250  Q
    |||||||||||||||||||||||||||||||    
T  12464845 atgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 5690896 - 5690859
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaa 258  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 185 - 392
Target Start/End: Original strand, 8655791 - 8655992
Alignment:
Q  185 tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg 284  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8655791 tccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctattgatgg 8655890  T
Q  285 aaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatc 384  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||    
T  8655891 aaatggaatattacaaaatgagaaaagttccctctaatggggtggttacaagttatttatactactctct------actaatatgctattaatctatatc 8655984  T
Q  385 tctaatac 392  Q
    ||||||||    
T  8655985 tctaatac 8655992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 30689634 - 30689805
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattgatgaaagtgaaatattacaaaatgagaaaagtaccctcta 30689733  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaatac 392  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30689734 atggggtggttacaaattatttatactactctctactaggactaatatgctactaatctatatctctaatac 30689805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 6825460 - 6825597
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactct 272  Q
    ||||||||||| |  ||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  6825460 gcagcggaaaaattgttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccatggaaggaaggagataaatctaacaaactct 6825559  T
Q  273 ttctattgatggaaatggaatattacaaaatgagaaaa 310  Q
    || ||||||| |||||||||||||||||||||||||||    
T  6825560 ttgtattgatagaaatggaatattacaaaatgagaaaa 6825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 24249894 - 24249778
Alignment:
Q  185 tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg 284  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||||||||| |||| ||||    
T  24249894 tccttaaaggtggatatcagattagctctgataccatgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatgg 24249795  T
Q  285 aaatggaatattacaaa 301  Q
    |||||||||||||||||    
T  24249794 aaatggaatattacaaa 24249778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 6823035 - 6823124
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 310  Q
    |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  6823035 tgttagaaaacatgacattcatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 787486 - 787416
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccat 242  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  787486 gcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 787416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 23343991 - 23343889
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| |||||||||||||||||||| |||  ||||||||||||||  |||||||   |||||  ||||||| ||||||||||||||| | ||    
T  23343991 gcagcggaaaatatccttcaaggtggataccaggttc--tctgataccatgtt--gaaacattatatccaatgaaggaatgagagaaaactaagagagtc 23343896  T
Q  272 tttctat 278  Q
    |||||||    
T  23343895 tttctat 23343889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 4555810 - 4555733
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattac 298  Q
    |||||||||||||||||||||| ||  |||||||  ||| |||| ||||||||| ||||||| |||||| ||||||||    
T  4555810 tgttaggaaacatggcatccatagatcgaaggagcaaaatctaacaaactctttgtattgatagaaatgaaatattac 4555733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 1136235 - 1136353
Alignment:
Q  228 aaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaaatgag-aaaagtaccctctaatggg 325  Q
    ||||||| ||||||||||||||| ||||||||  ||  ||| |||||| ||||||||||||| ||||||||| |||||||  |||||  || ||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattac-aaatgagtgaaagtgtccactaatggg 1136333  T
Q  326 gtggttacaagttatttata 345  Q
    |||| |||| | ||||||||    
T  1136334 gtgggtacacgctatttata 1136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 173 - 391
Target Start/End: Complemental strand, 24038450 - 24038231
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| |||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||     
T  24038450 gcagcggaaaatatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactt 24038351  T
Q  272 tttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgct 371  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  24038350 tttctattgatgaaaatggaatattacaatatgagaaaagtgccctctaatggagtggttacaagttatttatactactctctactaggactaatatgct 24038251  T
Q  372 actaatctatatctctaata 391  Q
    ||||||||||||||||||||    
T  24038250 actaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 31180355 - 31180186
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-ccctcta 31180257  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31180256 atggggtggttagaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 31180186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 220 - 391
Target Start/End: Original strand, 31269462 - 31269632
Alignment:
Q  220 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31269462 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaattgaatattacaaaatgagaaaagtaccctct 31269561  T
Q  320 aatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||    
T  31269562 aatggggtggttacaagttatttatattactctctactaggactaatatgctact-atctatatatctaata 31269632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 24039596 - 24039426
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctcta 24039497  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24039496 atgaggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 24039426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 369
Target Start/End: Original strand, 36402684 - 36402832
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatga--gaaaagtaccctc 318  Q
    ||||| ||||||||  |||||||||| |||||||||||| |||  ||||||||| ||||||||||||| ||||||||| ||||||  ||||  ||||| |    
T  36402684 tgttatgaaacatgatatccatggaatgaaggagagaaatctac-aaactctttgtattgatggaaatagaatattac-aaatgagtgaaagttacccac 36402781  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatg 369  Q
    |||||||||||||||||  |||||||||||   |||| || ||||||||||    
T  36402782 taatggggtggttacaaactatttatactaaaatctactaagactaatatg 36402832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 36316272 - 36316346
Alignment:
Q  209 gctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    ||||||||||||| ||||||||||||  |||||  ||||||| ||||||||||| ||| | | ||||||||||||    
T  36316272 gctctgataccatattaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatg 36316346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 173 - 392
Target Start/End: Complemental strand, 21254334 - 21254115
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactct 272  Q
    ||||||||||| |  ||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  21254334 gcagcggaaaaattgttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactct 21254235  T
Q  273 ttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgcta 372  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  21254234 ttctattgatgaaaaaggaatattacaaaatgagaaaagttccctctaatggggcggttacaagttatttatactactctctactaggactaatatgcta 21254135  T
Q  373 ctaatctatatctctaatac 392  Q
    ||||||||||||||||||||    
T  21254134 ctaatctatatctctaatac 21254115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 202 - 391
Target Start/End: Original strand, 26873142 - 26873331
Alignment:
Q  202 cagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  26873142 cagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatagaatattacgaa 26873241  T
Q  302 atgagaaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||||  ||||||||||  || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  26873242 atgagaaaagtttcctctaatggaatgattacaagttatttttactactctctactaggactaatatgctactaatctatatctctaata 26873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 21256758 - 21256588
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 21256659  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  21256658 atggggtggttacaagttatttatactactctctactatgactaatatgctactaatctatatctctaata 21256588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 252 - 393
Target Start/End: Original strand, 31339169 - 31339311
Alignment:
Q  252 gagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatactact 350  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||  || | |||| |||||||||||||||||||||||||||||||||    
T  31339169 gagagaaaactaagaaactctttctatcgatggaaattgaatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatactact 31339268  T
Q  351 ctctattaggactaatatgctactaatctatatctctaatact 393  Q
    ||||| ||||||||||||  || || || ||||||||||||||    
T  31339269 ctctactaggactaatataatattattcaatatctctaatact 31339311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 41951682 - 41951768
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaa 258  Q
    |||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  41951682 gcagcggaaaatatccttcaaggcggataccagattagctctaataccatgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 35309098 - 35309181
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggaga 255  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||  ||||||| ||||    
T  35309098 gcagcggaaaatatccttcaaggtggataccagattagctctgataccatgttaggaaacatgatatccaatgaaggaatgaga 35309181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 4730741 - 4730657
Alignment:
Q  222 gttaggaaacatggcatccatggaaggaaggagagaaaa--ctaagaaactctttctattgatggaaatggaatattacaaaatga 305  Q
    |||||||||||||||||||||||| | ||||||| ||||  |||| ||||||||| ||||||||||||||||||||||||||||||    
T  4730741 gttaggaaacatggcatccatggatg-aaggagaaaaaaagctaacaaactctttgtattgatggaaatggaatattacaaaatga 4730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 43233963 - 43233901
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | | ||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatg 43233901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 30518636 - 30518743
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| || || ||||||||||||||||| ||||| |||||||||||  |||||||  || ||| |||||||  |||||||||| | ||| ||    
T  30518636 gcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatgatatacatagaaggaacaagagaaaactcaaaaaatc 30518735  T
Q  272 tttctatt 279  Q
    ||||||||    
T  30518736 tttctatt 30518743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 30558976 - 30559083
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| || || ||||||||||||||||| ||||| |||||||||||  |||||||  || ||| |||||||  |||||||||| | ||| ||    
T  30558976 gcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatgatatacatagaaggaacaagagaaaactcaaaaaatc 30559075  T
Q  272 tttctatt 279  Q
    ||||||||    
T  30559076 tttctatt 30559083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 15531461 - 15531535
Alignment:
Q  295 ttacaaaatgaga-aaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatat 368  Q
    ||||||||||||  ||||| ||| ||||||||||||||||||  |||||||| |||| |||||||||||||||||    
T  15531461 ttacaaaatgagtgaaagttcccactaatggggtggttacaaactatttatagtactatctattaggactaatat 15531535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 16685909 - 16686022
Alignment:
Q  175 agcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactcttt 274  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||| ||| || ||||| ||| ||| ||||||| || | |||| |||  || |||||    
T  16685909 agcggaaaattccttcaagttggataccaaattagctcttataccatcttatgagacatgacattcatagaaggaatgaaaaaaaagtaactaattcttt 16686008  T
Q  275 ctattgatggaaat 288  Q
     ||| |||||||||    
T  16686009 gtatcgatggaaat 16686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 15531594 - 15531644
Alignment:
Q  318 ctaatggggtggttacaagttatttatactactctctattaggactaatat 368  Q
    ||||| ||||||||||||| |||||||| |||| |||||||||||||||||    
T  15531594 ctaattgggtggttacaagctatttatagtactatctattaggactaatat 15531644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 41949333 - 41949370
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaa 258  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 31692726 - 31692796
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatg 243  Q
    |||| |||||||||||||||||||||||||| | |  || ||||| |||| || ||||||||| |||||||    
T  31692726 gcagtggaaaattccttcaaggtggataccatagtaactttgatatcatgatatgaaacatggaatccatg 31692796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 15543694 - 15543767
Alignment:
Q  227 gaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaa 300  Q
    |||||||| ||||||| ||| ||| ||||||||| |||  ||||| || ||||||||||||| |||| ||||||    
T  15543694 gaaacatgccatccatagaatgaatgagagaaaagtaactaactcattgtattgatggaaattgaatgttacaa 15543767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 2028 - 2198
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctcta 2127  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2128 atggggtggttacaagttatttatactactctctactaggactaatatgctattaatctatatctctaata 2198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 220 - 391
Target Start/End: Complemental strand, 361 - 190
Alignment:
Q  220 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctct 319  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  361 atgttaggaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 262  T
Q  320 aatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  261 aatggggtggttacaagttatttatactattctctactaggactaatatgctactaatctatatctctaata 190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 2547158 - 2546988
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaagttccctcta 2547059  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2547058 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 2546988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 5441013 - 5440887
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggag-agaaaactaagaaact 270  Q
    |||| ||||||| ||||||||  |||||||||| || ||||||||||||||||||||||||||||||| ||  || ||||||| | |||||||| |||||    
T  5441013 gcaggggaaaatatccttcaaaatggataccaggttagctctgataccatgttaggaaacatggcatctataaaaagaaggagaaaaaaactaacaaact 5440914  T
Q  271 ctttctattgatggaaatggaatatta 297  Q
    |||| ||||||| |||||| |||||||    
T  5440913 ctttgtattgattgaaatgaaatatta 5440887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 335
Target Start/End: Complemental strand, 5444859 - 5444744
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaa-ctaagaaactctttctattgatggaaatggaatattacaaaatgagaaaag-taccctc 318  Q
    ||||||||||||||||||| |||||| ||||||| ||||| |||| ||||||||| ||||||| ||||||||||||||| |||||| || || |||| ||    
T  5444859 tgttaggaaacatggcatctatggaaagaaggagggaaaaactaacaaactctttgtattgattgaaatggaatattac-aaatgataagagataccttc 5444761  T
Q  319 taatggggtggttacaa 335  Q
    ||||| |||||||||||    
T  5444760 taatgaggtggttacaa 5444744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 35783859 - 35783779
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    ||||| |||||||||||||||||||| |||||||  |||||||| ||||||||| ||||||| ||||||||||||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 35783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 394
Target Start/End: Original strand, 20880054 - 20880212
Alignment:
Q  237 atccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatga-gaaaagta-ccctctaatggggtggttaca 334  Q
    |||||||||||||| ||||||||| |||  |||||||| |||| |||  ||| |||  ||||||| ||| ||  |||| ||| |||||||||||||||||    
T  20880054 atccatggaaggaatgagagaaaagtaactaactctttgtattaatgagaatagaaagttacaaa-tgatgagcagtatcccactaatggggtggttaca 20880152  T
Q  335 agttatttatactactctctattaggactaatatgctactaatctatatctctaatacta 394  Q
    |||||||||||||||| |||| ||| ||||||    || ||||||| |||||||||||||    
T  20880153 agttatttatactactgtctactagaactaatgaattattaatctacatctctaatacta 20880212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 55851943 - 55852016
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatgga 245  Q
    |||||||||||| || ||| ||||||||||||   | |||||||||| ||||||||||||||||||||||||||    
T  55851943 gcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatgga 55852016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 27510483 - 27510545
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg 283  Q
    ||||||||||||||  |||||  ||||||| ||||||||||||||| | ||||||||||||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatg 27510545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 7785326 - 7785451
Alignment:
Q  269 ctctttctattgatggaaatggaatattacaaaatga--gaaaagtaccctctaatgg--ggtggttacaagttatttatactactctctattaggacta 364  Q
    |||||| ||||||||||||| ||||||||| ||||||  ||||  ||||| |||||||  |||| |||||| |||||||||||||  |||| || |||||    
T  7785326 ctctttgtattgatggaaattgaatattac-aaatgagtgaaagttacccactaatgggcggtgattacaaattatttatactacaatctactaagacta 7785424  T
Q  365 atatgctactaatctatatctctaata 391  Q
    ||| |  ||||| ||||||||| ||||    
T  7785425 atacgaaactaaactatatctccaata 7785451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 20880035 - 20879962
Alignment:
Q  318 ctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||| |||||||| ||||||||||||||| | |||| |||  ||||| | | |||||||||||| |||||||    
T  20880035 ctaatgaggtggttataagttatttatactaatgtctactagagctaatgtaccactaatctatatttctaata 20879962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 4167574 - 4167654
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    ||||| ||||| ||||||| || ||||||| ||||||||| | |  |||||||| ||| |||| |||| ||||||||||||    
T  4167574 tgttacgaaacgtggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaa 4167654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 221 - 392
Target Start/End: Original strand, 111544 - 111715
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctcta 320  Q
    |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactctttttattgatttaaatggaatattacaaaatgagaaaagttccctcta 111643  T
Q  321 atggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaatac 392  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  111644 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatac 111715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 4719 - 4581
Alignment:
Q  255 agaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctct 354  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  4719 agaaaactaagaaactctttctattgatgaaaatgaaatattacaaaatggaaaaagttccctctaatagggtggttacaaattatttatactactctct 4620  T
Q  355 attaggactaatatgctactaatctatatctctaatact 393  Q
    | ||||||||||||||||||||||||||| |||||||||    
T  4619 actaggactaatatgctactaatctatatatctaatact 4581  T

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Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 10018777 - 10018948
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||   |||| ||| ||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccatc 10018875  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||  |||| |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  10018876 taataaggtgattacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 10256091 - 10256262
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| |||||||   |||| ||| ||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccatc 10256189  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    ||||  ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  10256190 taataaggtggttacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10256262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 221 - 391
Target Start/End: Original strand, 10179974 - 10180145
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 318  Q
    |||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||  ||||| ||||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtgaaagtaaccctc 10180072  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||| || || |||||||||||||||| ||||||||| ||  |||||||||| ||||||||||||||||||||    
T  10180073 taataggatgattacaagttatttatattactctctactacaactaatatgccactaatctatatctctaata 10180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 221 - 355
Target Start/End: Original strand, 10123317 - 10123452
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgag-aaaagt-accctc 318  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||   |||| ||||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccctc 10123415  T
Q  319 taatggggtggttacaagttatttatactactctcta 355  Q
    ||||  |||||||||||||||||||||||||| ||||    
T  10123416 taataaggtggttacaagttatttatactactttcta 10123452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 391
Target Start/End: Original strand, 19954439 - 19954622
Alignment:
Q  209 gctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatga--g 306  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||| ||| ||||||  |    
T  19954439 gctctgataccatgttatgaaacatgacatccatggaaggaaggagagaaatctaacaatctctttgtattgatggaaatggaataatac-aaatgagtg 19954537  T
Q  307 aaaagtaccctctaatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||  ||||| |||||| ||| |||||||  ||||||||||||  ||||  | ||||| ||||  ||||| ||||||||| ||||    
T  19954538 aaagttacccactaatgaggttgttacaaactatttatactacaatctacaaagactattatgaaactaaactatatctccaata 19954622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 782838 - 782918
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaa 301  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||    
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaa 782918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 383
Target Start/End: Original strand, 8504202 - 8504365
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatg-gaatattacaaaatgagaaaagt-accctc 318  Q
    ||||||||| ||||  |||||||||||||| ||||||||||| | | |  |||||||||||||  || | |||||| ||||| ||||  || | ||||||    
T  8504202 tgttaggaatcatgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgataaagtgaatatcacaaa-tgagtgaattgaccctc 8504300  T
Q  319 taatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatat 383  Q
    ||||  ||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  8504301 taatttggttgttacaagttatttatactactctttactaggactaatatgccactaatctatat 8504365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 52737780 - 52737842
Alignment:
Q  173 gcagcggaaaat-tccttcaaggtggataccagattcgctctgataccatgttaggaaacatg 234  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52737780 gcagcggaaaatatccttcaaggtggataccagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 10514351 - 10514466
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaa-tggaatattacaaaatgaga-aaagtaccct- 317  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||| | ||||  |||||| |||     
T  10514351 tgttaggaatcatggcatccatggaaagaaggagagaaaactaataaactctttgtatt-atgaaaaatggaatattacaga-tgagtgaaagtatccta 10514448  T
Q  318 ctaatggggtggttacaa 335  Q
    ||||||||||||||||||    
T  10514449 ctaatggggtggttacaa 10514466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 10661756 - 10661871
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg-aaatggaatattacaaaatgag-aaaagta-ccct 317  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||| || | |||| |||||||||||||| |||||||  |||||| |||     
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactctttgtagt-atggaaaatggaatattac-aaatgagtgaaagtatccca 10661853  T
Q  318 ctaatggggtggttacaa 335  Q
    ||||||||||||||||||    
T  10661854 ctaatggggtggttacaa 10661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 394
Target Start/End: Complemental strand, 10744885 - 10744725
Alignment:
Q  236 catccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttaca 334  Q
    ||||||| ||||||| ||||||||  ||  ||| |||||| ||||||||||||| |||||||| ||| |    ||| | ||| |||||| ||||||| ||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaattagtgaaattgcccactaatgaggtggtttca 10744786  T
Q  335 agttatttatactactctctattaggactaatatgctactaatc-tatatctctaatacta 394  Q
    || ||||||||||||| | ||||| ||||||||| | ||||||| ||||||||||||||||    
T  10744785 agctatttatactactatatattaagactaatataccactaatcatatatctctaatacta 10744725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 10511027 - 10511141
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatgg-aaatggaatattacaaaatga-gaaaagta-ccct 317  Q
    |||||||||||||| |||| |||||| ||| ||||||||||||| ||||||||| |||| |||| |||||||||||||| |||||| | |||||| |||     
T  10511027 tgttaggaaacatg-catctatggaaagaatgagagaaaactaacaaactctttgtatt-atggaaaatggaatattac-aaatgagggaaagtatccca 10511123  T
Q  318 ctaatggggtggttacaa 335  Q
    ||||||||||||||||||    
T  10511124 ctaatggggtggttacaa 10511141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 20868895 - 20868825
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatg 243  Q
    |||||||||||||  ||||||||||||||||     |||||||||||||||| ||||||||||||||||||    
T  20868895 gcagcggaaaattgtttcaaggtggataccaatcatgctctgataccatgttgggaaacatggcatccatg 20868825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 4602444 - 4602399
Alignment:
Q  180 aaaattccttcaaggtggataccagattcgctctgataccatgtta 225  Q
    |||||||||||||||||||||| || || |||||||||||||||||    
T  4602444 aaaattccttcaaggtggatactaggttagctctgataccatgtta 4602399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 10613346 - 10613426
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatg-gaaatggaatattacaaa 301  Q
    |||| |||| |||| ||||||| ||| ||| ||||||||||||| ||||||||| |||| |||  |||||||||||||||||    
T  10613346 tgttgggaatcatgacatccatagaaagaatgagagaaaactaacaaactctttgtatt-atgcaaaatggaatattacaaa 10613426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 17743141 - 17743104
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaa 258  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 19044461 - 19044424
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaa 258  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 222 - 391
Target Start/End: Complemental strand, 782 - 612
Alignment:
Q  222 gttaggaaacatggcatccatggaaggaaggagagaaaactaagaaa-ctctttctattgatggaaatggaatattacaaaatgagaaaagt-accctct 319  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||  ||| |||||| ||||||||||||| |||||||| ||||||||  |||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatatta-aaaatgagtgaagtcaccctct 684  T
Q  320 aatggggtggttacaagttatttatactactctctattaggactaatatgctactaatctatatctctaata 391  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  683 aatggggtggatacaagttatttatactactctctactaggattaatatggcactaatctatatctctaata 612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 146672 - 146809
Alignment:
Q  173 gcagcggaaaattccttcaaggtggataccagattcgctctgataccatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactct 272  Q
    ||||||||||| |  ||||||||||||||||     ||| ||||||||||||||||||||||||||| || |||||||||||| ||| |||| |||||||    
T  146672 gcagcggaaaaattgttcaaggtggataccaatcatgctttgataccatgttaggaaacatggcatctatagaaggaaggagataaatctaacaaactct 146771  T
Q  273 ttctattgatggaaatggaatattacaaaatgagaaaa 310  Q
    || ||||||| |||||||||||||||||||||||||||    
T  146772 ttatattgatagaaatggaatattacaaaatgagaaaa 146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 144661 - 144750
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaa 310  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 144750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 408 - 458
Alignment:
Q  221 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactc 271  Q
    |||||||||||| ||||||||||||||||| |||||||| |||| ||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaaatctaacaaactc 458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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