View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16781_low_5 (Length: 250)
Name: NF16781_low_5
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16781_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 2548832 - 2548610
Alignment:
| Q |
18 |
atttacctattggcctagtggtccacacatattgaaataaatgcacacatattgggaagatgtggtgacctccgatttaaatccagaattttacataaaa |
117 |
Q |
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| T |
2548832 |
atttacctattggcctagtggtccacacat--tgaaataaatgcacacatattgggaagatgtggtgacctccgatttaaatccagaattttacataaaa |
2548735 |
T |
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| Q |
118 |
tatcttcacatgcgaaccattttgtaacaacgagagcattgttcaataaacgttatgtacttgcgcaggagtacaataattgtatctaagatttagacta |
217 |
Q |
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| T |
2548734 |
tatcttcacatgcg-acaactttgtaacaacgaggacattgttcaataaacgttctgtacttgcgcaagagtacaataattgtatctaggatttagacta |
2548636 |
T |
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| Q |
218 |
tttatgagatttcttgagaataatct |
243 |
Q |
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| T |
2548635 |
tttatgagatgtcttgagaataatct |
2548610 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 14259538 - 14259583
Alignment:
| Q |
182 |
gcaggagtacaataattgtatctaagatttagactatttatgagat |
227 |
Q |
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| T |
14259538 |
gcaggagtacaataattgtatctagggtttagactatttttgagat |
14259583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 18299019 - 18298964
Alignment:
| Q |
186 |
gagtacaataattgtatctaagatttagactatttatgagatttcttgagaataat |
241 |
Q |
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| T |
18299019 |
gagtacaataatagaatctagggtttagactatttatgagatgccttgagaataat |
18298964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 17345823 - 17345864
Alignment:
| Q |
186 |
gagtacaataattgtatctaagatttagactatttatgagat |
227 |
Q |
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| T |
17345823 |
gagtacaataattgtatctagggtttagactgtttatgagat |
17345864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 14002364 - 14002404
Alignment:
| Q |
187 |
agtacaataattgtatctaagatttagactatttatgagat |
227 |
Q |
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| T |
14002364 |
agtacaataatcgtatctaaggtttagactgtttatgagat |
14002404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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