View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16781_low_6 (Length: 247)
Name: NF16781_low_6
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16781_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 42667074 - 42666845
Alignment:
| Q |
1 |
attgagctcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcatt |
100 |
Q |
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| T |
42667074 |
attgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggtgactttgttagaatagatagcatt |
42666975 |
T |
|
| Q |
101 |
agtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggtgaagaaactggaattgatctattggtgtatccaaatccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
42666974 |
agtagttcaagttcggtagatatagatgaggaagtagtggagttaccaaccattagtggcgaagaacctggaattgatctattggtgtatccaaatccca |
42666875 |
T |
|
| Q |
201 |
accccggtgttgataacaaagctggtagtt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42666874 |
accccggtgttgataacaaagctggtagtt |
42666845 |
T |
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