View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16781_low_7 (Length: 239)

Name: NF16781_low_7
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16781_low_7
NF16781_low_7
[»] chr4 (11 HSPs)
chr4 (15-228)||(43179504-43179718)
chr4 (85-222)||(42468559-42468687)
chr4 (85-222)||(42470888-42471016)
chr4 (85-223)||(50855880-50856009)
chr4 (156-223)||(13774149-13774216)
chr4 (64-223)||(8739308-8739458)
chr4 (156-221)||(13776447-13776512)
chr4 (22-211)||(24908178-24908366)
chr4 (85-223)||(19429196-19429325)
chr4 (85-223)||(45162115-45162244)
chr4 (85-223)||(45167007-45167136)
[»] chr2 (8 HSPs)
chr2 (3-222)||(34576710-34576930)
chr2 (26-223)||(23859871-23860068)
chr2 (156-224)||(42275673-42275741)
chr2 (85-223)||(31486819-31486948)
chr2 (156-224)||(42277899-42277967)
chr2 (64-223)||(29801895-29802045)
chr2 (85-223)||(31489103-31489232)
chr2 (93-169)||(8995212-8995287)
[»] chr5 (10 HSPs)
chr5 (25-222)||(1779328-1779520)
chr5 (3-197)||(1779587-1779776)
chr5 (85-223)||(37207808-37207937)
chr5 (85-223)||(37215399-37215528)
chr5 (85-223)||(11850026-11850155)
chr5 (85-223)||(23164359-23164488)
chr5 (85-223)||(22600848-22600977)
chr5 (158-223)||(11852284-11852349)
chr5 (142-211)||(21743606-21743675)
chr5 (22-223)||(15468959-15469158)
[»] chr1 (10 HSPs)
chr1 (25-224)||(8933658-8933852)
chr1 (85-223)||(29833194-29833323)
chr1 (156-224)||(10909106-10909174)
chr1 (85-224)||(2403945-2404075)
chr1 (85-223)||(734697-734826)
chr1 (58-209)||(18353719-18353863)
chr1 (156-224)||(10911350-10911418)
chr1 (156-224)||(13011696-13011764)
chr1 (158-220)||(29833872-29833934)
chr1 (158-223)||(2410068-2410133)
[»] chr7 (16 HSPs)
chr7 (25-223)||(42678680-42678873)
chr7 (1-223)||(19786628-19786828)
chr7 (70-223)||(3052125-3052269)
chr7 (85-223)||(8733616-8733745)
chr7 (85-223)||(19789005-19789134)
chr7 (85-222)||(3932651-3932779)
chr7 (85-222)||(3934890-3935018)
chr7 (156-224)||(8731293-8731361)
chr7 (156-223)||(28610359-28610426)
chr7 (85-223)||(36464342-36464471)
chr7 (158-223)||(8414610-8414675)
chr7 (121-190)||(19094003-19094072)
chr7 (25-67)||(16497061-16497103)
chr7 (1-67)||(16535243-16535309)
chr7 (1-67)||(16630353-16630419)
chr7 (181-224)||(18395337-18395380)
[»] chr6 (1 HSPs)
chr6 (3-223)||(21199156-21199373)
[»] chr3 (6 HSPs)
chr3 (4-223)||(18966230-18966440)
chr3 (31-220)||(1701061-1701250)
chr3 (156-223)||(4530833-4530900)
chr3 (35-222)||(8535464-8535651)
chr3 (164-223)||(4533138-4533197)
chr3 (1-38)||(18966436-18966473)
[»] chr8 (7 HSPs)
chr8 (85-222)||(4876928-4877056)
chr8 (85-222)||(4879256-4879384)
chr8 (85-223)||(36379586-36379715)
chr8 (85-222)||(24519274-24519402)
chr8 (85-220)||(21268252-21268378)
chr8 (85-223)||(36377301-36377430)
chr8 (22-102)||(12895377-12895457)
[»] scaffold0050 (2 HSPs)
scaffold0050 (28-223)||(31527-31719)
scaffold0050 (55-223)||(29246-29404)
[»] scaffold0599 (1 HSPs)
scaffold0599 (158-223)||(1616-1681)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 43179504 - 43179718
Alignment:
Q  15 gaacatcaaagaataataaggaagctactagacactctactaaataaaataaaa-ttaagcattaaagaaatcttaacttttctggatccttctagtcat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  43179504 gaacatcaaagaataataaggaagctactagacactctactaaataaaataaaaattaagcattaaagaaatcttaacttttttggatccttctagtcat 43179603  T
Q  114 atggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaatta 213  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  || ||||||||||||||||||    
T  43179604 atgaactagagtatccatgtctctatacttttctttgtaatcaatgtttgtagatatttctagtttgtaatgcagagtttttctagagtagtataaatta 43179703  T
Q  214 ggctcaccactctct 228  Q
    ||||||| |||||||    
T  43179704 ggctcacgactctct 43179718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 42468687 - 42468559
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  42468687 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 42468597  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  42468596 ggagagccttcctagagtagtataaataaggctcacca 42468559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 42471016 - 42470888
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  42471016 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 42470926  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  42470925 ggagagccttcctagagtagtataaataaggctcacca 42470888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 50856009 - 50855880
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| |||||||||||||| |||||| ||||||||||||         |||||||||||||||||| |||||    
T  50856009 tcttaacttttctagatccttctaggcttatgtaccagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaat 50855919  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| ||| |||||||    
T  50855918 ggagagccttcctagagtagtataaataaggttcaccac 50855880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 13774149 - 13774216
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13774149 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccac 13774216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 8739308 - 8739458
Alignment:
Q  64 taaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttc 163  Q
    |||||||| ||| ||  ||||||||||  ||||| |||||||||||||||||| || |||| |||||| |||||| | ||||||||||         |||    
T  8739308 taaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaactagagcatccatatctctagatttttctttgt---------ttc 8739398  T
Q  164 tagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||||    
T  8739399 tagatatttctagtttgtaatgtagagccttcctagagttgtataaacaaggcttaccac 8739458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 13776447 - 13776512
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcacc 221  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  13776447 aatgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaataaggctcacc 13776512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 24908366 - 24908178
Alignment:
Q  22 aaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggacca 121  Q
    |||||||| || ||||||| |||||| | ||||||||||| ||||| | ||||||||   ||||  |||||||||| | || || |||||||||| || |    
T  24908366 aaagaatattatggaagcttctagacgcactactaaataagataaattaaagcattaggaaaatagtaacttttctaggtctttttagtcatatgaacta 24908267  T
Q  122 gagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 211  Q
     ||||||||| ||| || ||||||| ||||||| |||| ||||| || |||||| ||||||| || || |||||||||||||||||||||    
T  24908266 aagtatccatatctttagacttttc-ttgtaataaatgcttctacatctttctactttgtaacgtggaaccttcctagagtagtataaat 24908178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 19429325 - 19429196
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||| |||||||| ||||||||||||  |||| || ||||||| ||| |||||| ||||||||||||         || |||||||||||||||||||||    
T  19429325 tcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgt---------ttatagatatttctagtttgtaat 19429235  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||| ||||||||||||||||| |||||||||||    
T  19429234 ggagagcctacctagagtagtataaataaggctcaccac 19429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 45162115 - 45162244
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||| |||||||| |||||||||||   |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  45162115 tctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 45162205  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||| ||||||||| |||||||||| |||||||||||    
T  45162206 ggagagtcttcctagaatagtataaataaggctcaccac 45162244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 45167007 - 45167136
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||| |||||||| |||||||||||   |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  45167007 tctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 45167097  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||| ||||||||| |||||||||| |||||||||||    
T  45167098 ggagagtcttcctagaatagtataaataaggctcaccac 45167136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 34576930 - 34576710
Alignment:
Q  3 tggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatc 102  Q
    |||||||||||| || |  |||||||||  ||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||    
T  34576930 tggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaataaaattacgcactagagaaatcttaacttttctagatc 34576831  T
Q  103 cttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcct-agag 201  Q
    |||||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  34576830 cttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctaagat 34576731  T
Q  202 tagtataaattaggctcacca 222  Q
    |||||||||| ||||||||||    
T  34576730 tagtataaataaggctcacca 34576710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 23859871 - 23860068
Alignment:
Q  26 aataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagt 125  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||  || || |||||||||| ||||||| ||||||||||||| |||| || |||||    
T  23859871 aataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagt 23859970  T
Q  126 atccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    || ||||| ||||  | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23859971 atgcatgtttctaggcctttctttgtaatcaatatttctagataattctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccac 23860068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 42275741 - 42275673
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42275741 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccact 42275673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 31486819 - 31486948
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||  ||||||||||||         ||| ||||||||||||||||||||    
T  31486819 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt---------ttccagatatttctagtttgtaat 31486909  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  31486910 ggagagccttcctagagtagtataaataaggctcaccac 31486948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 42277967 - 42277899
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  42277967 aatgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaataaggctcaccact 42277899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 29801895 - 29802045
Alignment:
Q  64 taaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttc 163  Q
    |||||||||||| |  | |||||||||  |||||  ||||||||||||||||| || | || |||||| |||||| ||||||||||||         ||     
T  29801895 taaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgt---------ttg 29801985  T
Q  164 tagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||    
T  29801986 tagatatttctagtttgtaatggggagtcttcctagagtagtataaataaggctcaccac 29802045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 31489103 - 31489232
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||| ||||||| ||||||||||  | |||| || ||||||||||| |||||  ||||||||||||         ||| ||||||||||||||||||||    
T  31489103 tcttagcttttctagatccttctaagcttatgtactagagtatccatatctctggacttttctttgt---------ttccagatatttctagtttgtaat 31489193  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||||||||||| |||||||||||| |||||||||||    
T  31489194 ggagagccttcctaaagtagtataaataaggctcaccac 31489232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 8995287 - 8995212
Alignment:
Q  93 tttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagata 169  Q
    ||||| |||||||||||||||||| || ||||||||||||  ||||  | ||||||||||||| |||||||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtatccatgcttctaggcctttctttgtaatc-atgtttctagata 8995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 1779520 - 1779328
Alignment:
Q  25 gaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagag 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||     ||| || | |||||||||  ||||| |||||||||||||||||| || ||||    
T  1779520 gaataataaggaagctactagacactccactaaataaaataaa-----gcactagaaaaatcttaatgtttctagatccttctagtcatatgaactagag 1779426  T
Q  125 tatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcacca 222  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1779425 tatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagagccttcctagagtggtataaataaggctcacca 1779328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 1779776 - 1779587
Alignment:
Q  3 tggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatc 102  Q
    ||||||||||||||| |  ||||||||||   |||||||||||||| ||||||  ||||||||||     ||  ||  ||||||||||  ||||| ||||    
T  1779776 tggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaa-----gcgctagggaaatcttaatgtttctagatc 1779682  T
Q  103 cttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcct 197  Q
    |||||||||||||| || ||| ||||| | ||||||  | |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1779681 cttctagtcatatgaactagaatatccctatctctaggcctttccttgtaatcaatgtttctagatatttctagtttgtaatgtaaagccttcct 1779587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 37207808 - 37207937
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || |||||||||||||||||| ||||||||||||         |||||||||||||||||| |||||    
T  37207808 tcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagttggtaat 37207898  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  37207899 ggagagccttcctagagtagtataaataaggctcaccac 37207937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 37215399 - 37215528
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||  || |||||||||||||||||| ||||||||||||         |||||||||||||||||| |||||    
T  37215399 tcttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgt---------ttctagatatttctagttggtaat 37215489  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  37215490 gaagagccttcctagagtagtataaataaggctcaccac 37215528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 11850155 - 11850026
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||||| |||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         |||||||||||||||||| |||||    
T  11850155 tcttaaattttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaat 11850065  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  11850064 ggagagccttcctagagtagtataaataaggctcaccac 11850026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 23164488 - 23164359
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         |||||||||||||||||| |||||    
T  23164488 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaat 23164398  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||| ||||||    
T  23164397 ggagagccttcctagagtagtataaataaggcccaccac 23164359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 22600848 - 22600977
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         |||||||||||||||||| |||||    
T  22600848 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagttggtaat 22600938  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||| ||| ||| |||||||||||| |||||||||||    
T  22600939 ggagagtcttgctaaagtagtataaataaggctcaccac 22600977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 11852349 - 11852284
Alignment:
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  11852349 tgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcaccac 11852284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 21743606 - 21743675
Alignment:
Q  142 ttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 211  Q
    |||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  21743606 ttttctttgtaatccatgtttttagatatttttagtttgtagtgtagagccttcctagagtagtataaat 21743675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 15468959 - 15469158
Alignment:
Q  22 aaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggacca 121  Q
    |||||| | ||||||||||  ||||||||  ||||||||| ||||||| ||||| ||   |||| ||||||||||| ||||| |||||||||||| |  |    
T  15468959 aaagaacattaaggaagcttatagacact--actaaataagataaaataaagcactaggaaaatattaacttttctagatccatctagtcatatgaatta 15469056  T
Q  122 gagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcacc 221  Q
    | ||||| || |||||| ||||||| |||||||||| | ||| ||||  ||||| |||||||  | ||| ||| ||| ||||||||||||  ||||||||    
T  15469057 gtgtatctatatctctaaacttttccttgtaatcaaagcttcaagatcattctattttgtaacatggagtcttactatagtagtataaatatggctcacc 15469156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 8933852 - 8933658
Alignment:
Q  25 gaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagag 124  Q
    ||||||||||||||||| |||||||||||||||||||||||||     ||| ||   |||||||||  ||||| |||||||||||||||||| || ||||    
T  8933852 gaataataaggaagctattagacactctactaaataaaataaa-----gcactaggaaaatcttaatgtttctagatccttctagtcatatgaactagag 8933758  T
Q  125 tatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  8933757 tatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcctagagtagtataaataaggctcaccact 8933658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 29833323 - 29833194
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || |||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||    
T  29833323 tcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt---------ttctagatatttctagtttgtaat 29833233  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  29833232 ggagagccttcctagagtagtataaataaggctcaccac 29833194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 10909106 - 10909174
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10909106 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccact 10909174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 2404075 - 2403945
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  2404075 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 2403985  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccact 224  Q
    | |||| |||||||||||||||||||| ||| ||||||||    
T  2403984 ggagagtcttcctagagtagtataaataaggttcaccact 2403945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 734826 - 734697
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| |||||||||||   |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  734826 tcttaacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 734736  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||||||||||||| |||||||||| |||||||||||    
T  734735 ggagagccttcctagaatagtataaataaggctcaccac 734697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 18353719 - 18353863
Alignment:
Q  58 ataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaa 157  Q
    ||||||||||||| |||| ||   |||||||| ||||||| |||||||||||||||||| || |||||||||||||       ||||| ||| |||||||    
T  18353719 ataaaataaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgt-------cttttatttctaatcaa 18353811  T
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataa 209  Q
    ||||||||||| |||||| |||||||||| |||| || ||||||||||||||    
T  18353812 tgtttctagatctttctattttgtaatgtggagcattactagagtagtataa 18353863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 10911350 - 10911418
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  10911350 aatgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaataaggctcaccact 10911418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 13011696 - 13011764
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  13011696 aatgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaataaggctcaccact 13011764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 29833872 - 29833934
Alignment:
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcac 220  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  29833872 tgtttctagatatttctagttggtaatggagagccttcctagagtagtataaataaggctcac 29833934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 2410133 - 2410068
Alignment:
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  2410133 tgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaataaggctcaccac 2410068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 42678873 - 42678680
Alignment:
Q  25 gaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagag 124  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||| ||   |||||||||  ||||| ||||||||||||||||||  | ||||    
T  42678873 gaataataaggaagctactagacactctactaaataaaataaa-----gcactaggaaaatcttaatgtttctagatccttctagtcatatgacctagag 42678779  T
Q  125 tatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |  ||||||||||| |||||||||||    
T  42678778 tatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcccaaggtagtataaataaggctcaccac 42678680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19786628 - 19786828
Alignment:
Q  1 tgtggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctgga 100  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||||||  |||||||||           ||| ||  ||| ||||||||||||| ||    
T  19786628 tgtggaagtctctagaatattagggaataataaggaagctactagacact--actaaataa-----------gcactagggaagtcttaacttttctaga 19786714  T
Q  101 tccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctaga 200  Q
    ||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||| ||||||||||||||    
T  19786715 tccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaatggagagccttcctaga 19786805  T
Q  201 gtagtataaattaggctcaccac 223  Q
    ||||||||||| |||||||||||    
T  19786806 gtagtataaataaggctcaccac 19786828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 3052125 - 3052269
Alignment:
Q  70 taagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagata 169  Q
    |||||||||  ||| ||||||||||||| ||||||||||||  |||| || ||| ||||||| |||||| ||||||||||||         |||||||||    
T  3052125 taagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctctagacttttctttgt---------ttctagata 3052215  T
Q  170 tttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  3052216 tttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccac 3052269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 8733745 - 8733616
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         |||||||||||||||||||||||     
T  8733745 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaaa 8733655  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  8733654 ggagagccttcctagagtagtataaataaggctcaccac 8733616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 19789005 - 19789134
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  19789005 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 19789095  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | |||||||| |||||||||||||||| |||||||||||    
T  19789096 ggagagccttactagagtagtataaataaggctcaccac 19789134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 3932651 - 3932779
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  3932651 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 3932741  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | |||||||||||||| |||||||||| ||||||||||    
T  3932742 ggagagccttcctagaatagtataaataaggctcacca 3932779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 3934890 - 3935018
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  3934890 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 3934980  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | |||||||||||||| |||||||||| ||||||||||    
T  3934981 ggagagccttcctagaatagtataaataaggctcacca 3935018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 8731361 - 8731293
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8731361 aatgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaataaggctcaccact 8731293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 28610426 - 28610359
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28610426 aatgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaataaggctcaccac 28610359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 36464471 - 36464342
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||| |||||||| ||||||||||||  |||| || ||||||||||| |||| | ||||||||||||         ||||||||||||||||||| ||||    
T  36464471 tcttgacttttctagatccttctagttttatgtactagagtatccatatctccagacttttctttgt---------ttctagatatttctagtttataat 36464381  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  36464380 ggagagccttcctagagtagtataaataaggctcaccac 36464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 8414675 - 8414610
Alignment:
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  8414675 tgtttctagatttttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccac 8414610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 19094072 - 19094003
Alignment:
Q  121 agagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagag 190  Q
    |||||||||||||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  19094072 agagtatccatgtctctagacttttctttgtaatcgatatttttagatatttctagtttgtaatgtagag 19094003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 16497103 - 16497061
Alignment:
Q  25 gaataataaggaagctactagacactctactaaataaaataaa 67  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16497103 gaataataaggaagctactagacactctactaaataaaataaa 16497061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16535309 - 16535243
Alignment:
Q  1 tgtggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaa 67  Q
    ||||||||||||||||| |  |  ||||||||| |||||||||||||||||||||||||||||||||    
T  16535309 tgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16535243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16630353 - 16630419
Alignment:
Q  1 tgtggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaa 67  Q
    ||||||||||||||||| |  |  ||||||||| |||||||||||||||||||||||||||||||||    
T  16630353 tgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16630419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 18395337 - 18395380
Alignment:
Q  181 taatgtagagccttcctagagtagtataaattaggctcaccact 224  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  18395337 taatgtagagccttcctagagtagtataaataaggctcaccact 18395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 21199156 - 21199373
Alignment:
Q  3 tggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatc 102  Q
    ||||||||||||||| |  |  |||||||||||||||||||| ||||||||||||||||||||||     ||| ||   |||||||||  ||||| ||||    
T  21199156 tggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaa-----gcactagttaaatcttaatgtttctagatc 21199250  T
Q  103 cttctagtcatatggaccagagtatccat--gtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctaga 200  Q
    |||||||||||||| ||  ||||||||||  |||||||  | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  21199251 cttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttcctgga 21199350  T
Q  201 gtagtataaattaggctcaccac 223  Q
    ||| ||||||| ||| |||||||    
T  21199351 gtactataaataaggttcaccac 21199373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 18966440 - 18966230
Alignment:
Q  4 ggaagtctctagaacatcaaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatcc 103  Q
    |||||||||||||| |  | | |||||||||| |||||||||| |||||||||||| ||||||||||||||| ||   |||||||||  ||||| |||||    
T  18966440 ggaagtctctagaatactagataataataaggtagctactagatactctactaaatgaaataaaattaagcactaggaaaatcttaatgtttctagatcc 18966341  T
Q  104 ttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagta 203  Q
    ||||||||||| | || ||||||||||| |||||  |||||||||          ||||||||||||||||||| ||| ||| || | ||||||||||||    
T  18966340 ttctagtcatacgtactagagtatccatatctcttgacttttctt---------ggtttctagatatttctagtgtgtcatggagtgtcttcctagagta 18966250  T
Q  204 gtataaattaggctcaccac 223  Q
    |||||||| |||||||||||    
T  18966249 gtataaataaggctcaccac 18966230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 1701061 - 1701250
Alignment:
Q  31 taaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatcca 130  Q
    |||||||||| ||||||||| |||||||||| |||||||||| || ||  ||||||||||||||||| |||||||||||||||||| |  ||| ||||||    
T  1701061 taaggaagcttctagacactgtactaaataagataaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattagattatcca 1701160  T
Q  131 tgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcac 220  Q
    | | ||||  ||||||||| ||||||||| || ||||| |||||| |||||  || ||||||||   ||||| |||||||| ||| ||||    
T  1701161 tatttctaggcttttctttttaatcaatgcttgtagatctttctattttgttttgcagagccttataagagtggtataaataaggatcac 1701250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 4530833 - 4530900
Alignment:
Q  156 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4530833 aatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccac 4530900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 8535464 - 8535651
Alignment:
Q  35 gaagctactagacactctactaaataaaataaaattaagcattaaagaaatctta-acttttctggatccttctagtcatatggaccagagtatccatgt 133  Q
    |||||| |||||||||||||||||||| ||||||| ||||| || | ||||||||   |||| | |||||||||||||||||  || | ||||||||| |    
T  8535464 gaagcttctagacactctactaaataagataaaataaagcactagaaaaatcttatttttttttagatccttctagtcatataaactaaagtatccatat 8535563  T
Q  134 ctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcacca 222  Q
    ||||| ||||||| ||||||| |||| ||||| || | |||| ||||||||||  |||||| |||||||| |||||||| || ||||||    
T  8535564 ctctagacttttc-ttgtaataaatgcttctaaatctgtctactttgtaatgtgaagccttactagagtaatataaattgggttcacca 8535651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 4533138 - 4533197
Alignment:
Q  164 tagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaataaggctcaccac 4533197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18966473 - 18966436
Alignment:
Q  1 tgtggaagtctctagaacatcaaagaataataaggaag 38  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  18966473 tgtggaagtctctagaacaccaaagaataatagggaag 18966436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 4876928 - 4877056
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || | ||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  4876928 tcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 4877018  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  4877019 ggagagccttcctagagtagtataaataaggctcacca 4877056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 4879256 - 4879384
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || | ||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  4879256 tcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 4879346  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  4879347 ggagagccttcctagagtagtataaataaggctcacca 4879384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 36379715 - 36379586
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||  ||||||||||||         ||| ||||||||||||||||||||    
T  36379715 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgt---------ttccagatatttctagtttgtaat 36379625  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  36379624 ggagagccttcctagagtagtataaataaggctcaccac 36379586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 24519402 - 24519274
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || | ||||||||| |||||| ||||||||||||         ||||||||||||||||||| ||||    
T  24519402 tcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgt---------ttctagatatttctagtttataat 24519312  T
Q  185 gtagagccttcctagagtagtataaattaggctcacca 222  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  24519311 ggagagccttcctagagtagtataaataaggctcacca 24519274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 21268378 - 21268252
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    |||| |||||||| ||||||||||||  |||| || | ||||||||| |||||| ||||||||||||         ||||||||||||||||||||||||    
T  21268378 tcttgacttttctagatccttctagttttatgtactaaagtatccatatctctagacttttctttgt---------ttctagatatttctagtttgtaat 21268288  T
Q  185 gtagagccttcctagagtagtataaattaggctcac 220  Q
    | ||||||||||||||||||||||||| ||||||||    
T  21268287 ggagagccttcctagagtagtataaataaggctcac 21268252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 36377430 - 36377301
Alignment:
Q  85 tcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaat 184  Q
    ||||||||||||| ||||||||||| | |||| || ||||||||||| |||||  ||||||||||||        |||| ||||||||||| ||||||||    
T  36377430 tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctgaacttttctttgt--------tttc-agatatttctactttgtaat 36377340  T
Q  185 gtagagccttcctagagtagtataaattaggctcaccac 223  Q
    | ||||||||||||||||||||||||| |||||||||||    
T  36377339 ggagagccttcctagagtagtataaataaggctcaccac 36377301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 12895377 - 12895457
Alignment:
Q  22 aaagaataataaggaagctactagacactctactaaataaaataaaattaagcattaaagaaatcttaacttttctggatc 102  Q
    |||||||| |||| || || ||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||| ||||    
T  12895377 aaagaatattaagaaaacttctagacactctactaaataagttaaaattaagcattagagaaatctaaacttttctagatc 12895457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 31527 - 31719
Alignment:
Q  28 taataaggaagctactagacactctactaaataaaataaaattaa-----gcattaaagaaatcttaacttttctggatccttctagtcatatggaccag 122  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||     ||| ||  ||||||||||  ||||| |||||||||||||||||| || ||    
T  31527 taataaggaagctactagatactctactgaataaaattaaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactag 31626  T
Q  123 agtatccatgt--ctctatacttttctttgtaatcaatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcac 220  Q
    |  |||||| |  ||||| |||||||||          |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  31627 aacatccatatatctctagacttttctt----------gtttttagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcac 31716  T

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Target: scaffold0050; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 29246 - 29404
Alignment:
Q  55 taaataaaataaaattaagcattaaagaaatcttaacttttctggatccttctagtcatatggaccagagtatccatgtctctatacttttctttgtaat 154  Q
    ||||| |||| |||||||||| ||  ||||||||||  ||||| |||||||||||||||||| || |||  |||||| |||||| |||||||||          
T  29246 taaattaaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttctt------ 29339  T
Q  155 caatgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
        |||||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  29340 ----gtttctagatatttttagtttgtaatggagagtcttcctagagtagtataaataaggctcaccac 29404  T

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Target: scaffold0599 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 1616 - 1681
Alignment:
Q  158 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaattaggctcaccac 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  1616 tgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaataaggctcaccac 1681  T

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