View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16781_low_8 (Length: 211)
Name: NF16781_low_8
Description: NF16781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16781_low_8 |
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| [»] scaffold0051 (4 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 6276 - 6084
Alignment:
| Q |
16 |
tttcatactcaagtgtgtgctatatttgccttaaaccttcttgatnnnnnnnnctatcaaactaagaacaaatgctctttggggaggttaaacatcttga |
115 |
Q |
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| T |
6276 |
tttcatactcaagtgtgtgctatatttgccttaaaccttcttgataaaaaaaactgtcaaacttagaacaaatgctgtttgtagaagttaaacatcttga |
6177 |
T |
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| Q |
116 |
taacaatactttctctctaactattaaagtatatgccattaaccaatatcaaaactatactatttgaaactcacaatattatctaataatacac |
209 |
Q |
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| T |
6176 |
taaaaacactttctctctaagtattaaagtatatgcca-taaccaatatcaaaagtatactatttgaaactcgctacattacttaataatacac |
6084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 3085 - 2894
Alignment:
| Q |
16 |
tttcatactcaagtgtgtgctatatttgccttaaaccttcttgatnnnnnnnnctatcaaactaagaacaaatgctctttggggaggttaaacatcttga |
115 |
Q |
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||||||||||| |||| |||||||||| ||||||||||||||||| | | ||||| ||||| ||||||||||| || |||||||||||||| |
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| T |
3085 |
tttcatactcatgtgtctgctatattttccttaaaccttcttgataaaaaaa-cagtgaaacttagaactaatgctctttgtagaagttaaacatcttga |
2987 |
T |
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| Q |
116 |
taacaatactttctctctaactattaaagtatatgccattaaccaatatcaaaactatactatttgaaactcacaatattatctaataatacac |
209 |
Q |
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| T |
2986 |
taaaaacaccttctctctaagtattaaacaatatgcca-taaccaatatcaaaagtatactatttgaaactcgctacattacttaataatacac |
2894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 7259 - 7215
Alignment:
| Q |
16 |
tttcatactcaagtgtgtgctatatttgccttaaaccttcttgat |
60 |
Q |
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| T |
7259 |
tttcatactcaagtgtgtgctatatttgccttaaaccttcttgat |
7215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 207 - 29
Alignment:
| Q |
17 |
ttcatactcaagtgtgtgctatatttgccttaaaccttcttgatnnnnnnnnctatcaaactaagaacaaatgctctttggggaggttaaacatcttgat |
116 |
Q |
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|||||||||| |||| |||||||||| || |||||||||||||| | | ||||| ||||||||||||||||| || ||||||||||||| | |
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| T |
207 |
ttcatactcatgtgtctgctatattttccataaaccttcttgataaaaaaaacagtgaaacttagaacaaatgctctttgtagaagttaaacatcttgtt |
108 |
T |
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| Q |
117 |
aacaatactttctctctaactattaaagtatatgccattaaccaatatcaaaactatactatttgaaactcacaatattatctaataatacac |
209 |
Q |
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|| || |||||| ||||||||||||| |||||||||||||| ||||||||||||||||| | | |||| ||||||||||| |
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| T |
107 |
aaaaacactttc-------------aagtatatgccat-aaccaatatcaaaagtatactatttgaaactcgctacattacttaataatacac |
29 |
T |
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