View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16782_high_3 (Length: 280)
Name: NF16782_high_3
Description: NF16782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16782_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 4243352 - 4243601
Alignment:
| Q |
18 |
gatataattcacacataatccaccatgtcttaaagagcaatttgacaacactgacgcatggagaacatgaaatgaagtttccccgttccattgtcttctc |
117 |
Q |
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| T |
4243352 |
gatataattcacacataatccaccatgtcgtaa-gagcaatttgacaacactaacacatggagaacatgaaatgaagtttccccgttccattgtcttctc |
4243450 |
T |
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| Q |
118 |
ttttgttatgctatctttgtatttttgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaat |
217 |
Q |
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| T |
4243451 |
tttttttatgctatctttgtatttttgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaat |
4243550 |
T |
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| Q |
218 |
gtttttagactaaaaacattgaactttttagattcattatacgtgtatttt |
268 |
Q |
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| T |
4243551 |
gtttttagactaaaaacattgaactttttagattcattatacgtgtatttt |
4243601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 4250501 - 4250680
Alignment:
| Q |
26 |
tcacacataatccaccatgtcttaaagagcaatttgacaacactgacgcatggagaacatgaaatgaagtttccccgttccattgtcttctcttttgtta |
125 |
Q |
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| T |
4250501 |
tcacacataatccaccgtgtcttaa-gcgcaatttgacgacacggacacgtggagagcatgaaatgaattttccgcgttccattgtattctcttttgttc |
4250599 |
T |
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| Q |
126 |
tgctatctttgtatttt---tgttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggat |
203 |
Q |
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| T |
4250600 |
tacggtgtttgtattttttctttctttcaatttttaatattcactatactcctcttgtaacaaaataaaagtcaaaaggat |
4250680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 3410828 - 3410736
Alignment:
| Q |
145 |
ttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaatgtttttagactaaaaacatt |
237 |
Q |
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| T |
3410828 |
ttgttcaatttttaatattcactatactccccatgtgataaaataaaagtaaaagggatccaaaaaattaagtgtttttagactaaatacatt |
3410736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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