View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16782_low_4 (Length: 239)
Name: NF16782_low_4
Description: NF16782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16782_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 33051989 - 33051790
Alignment:
| Q |
18 |
atgaatgctactacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggaataatatttggtataaagtgtgca |
117 |
Q |
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| T |
33051989 |
atgaatgctactacttgtgtttgtgctcttggaatcaagaattggaacaacatttattctttgtgcgaagtttggattaatattttgtataaagtgtgca |
33051890 |
T |
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| Q |
118 |
aataacttggagtttttatggttacccccaagagatttagaaactttgtttctggt-aattaactagactagccaggacgaaacaaaaaggggtgaaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051889 |
aataacttggagtttttatggttacccccaagagatttagaaactttgtttctggtaaattaactagactagccaggacgaaacaaaaaggggtgaaggt |
33051790 |
T |
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