View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_high_11 (Length: 257)
Name: NF16783_high_11
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 6524119 - 6524341
Alignment:
| Q |
19 |
agtgtttggtttcttgttcactctttcacttcacaaacaactannnnnnncttttgcaatgactttttcctttgaaaatgagtttccagccaatgttaaa |
118 |
Q |
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| T |
6524119 |
agtgtttggtttcttgttcactctttcacttcacaaacaactattcttttcttttacaatgactttttcctttggaaatgagtttccagccaatgttaaa |
6524218 |
T |
|
| Q |
119 |
gttcttgtgattgatcatgatattgatcttctcaatgctattgagaaaacattgtctcaattcaattaccaaggtttgtaaattaatatatggtaccttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524219 |
gttcttgtgattgatcatgatattgatcttctcaatgctattgacaaaacattgtctcaattcaattaccaaggtttgtaaattaatatatggtacctta |
6524318 |
T |
|
| Q |
219 |
tttgattcttaattgaactatat |
241 |
Q |
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||||||||||||||||| ||||| |
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| T |
6524319 |
tttgattcttaattgaattatat |
6524341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 44545032 - 44545263
Alignment:
| Q |
19 |
agtgtttggtttcttgttcactctttcacttcacaaacaactannnnnnncttttgcaatgactttttcctttgaaaatgagtttccagccaatgttaaa |
118 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
44545032 |
agtgtttgatttcttgctcactctttcacttcacaaacaactattcttttcttttgcaatgactttttcctttgggaatgtgtttccagccaatgttaaa |
44545131 |
T |
|
| Q |
119 |
gttcttgtgattgatcatgatattgatcttctcaatgctattgagaaaacattgtctcaattcaattaccaaggtttgtaaattaatatatggtaccttc |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44545132 |
gttcttgtgattgatcatgatatccatcttctcaatgctattgagaaaaaattgtctcaattcaattaccaaggtttgtaaattaatatatggtaccttg |
44545231 |
T |
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| Q |
219 |
tttgattcttaattgaactatattaacctatg |
250 |
Q |
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||||||||||||||||| ||| |||||||||| |
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| T |
44545232 |
tttgattcttaattgaattatgttaacctatg |
44545263 |
T |
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