View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_high_8 (Length: 320)
Name: NF16783_high_8
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 39924646 - 39924345
Alignment:
| Q |
1 |
ggggagtttgcccgtagcaacaacgcttcaaagaccataagaaaagaagatatcccacatctccatccaaaatcttaaaatattataagatatacgagtc |
100 |
Q |
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| T |
39924646 |
ggggagtttgcccgtagcaacaacgcttcaa-gaccataagagaagaagatatcccacatcttcatccaaaatcttaaaatattataagatatacgagtc |
39924548 |
T |
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| Q |
101 |
atatccttttattgttcatattttacaatctcaaagttgacgtgtgacttaacgattcacatgaaaatccaacaaattttctcttaaacgcgagtcgtcg |
200 |
Q |
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| T |
39924547 |
atatccttttattgttcatattttacaatctcaaaattgtcgtgtgacttaaccattcacatgaaaatccaacaaattttctcttaaacgcaagtcgtcg |
39924448 |
T |
|
| Q |
201 |
gcatcttataattggtctaaacatcatgattcactcccgctcctccactaagtcaaaacatgactctgatacaacatgttgaggagtttgcgagagcacc |
300 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39924447 |
gcatcttataattgatctaaacaccatgattcactcacgctcctcgactaagtcaaaacatgactctgatacaacatgttgaggagtttgcgagagcacc |
39924348 |
T |
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| Q |
301 |
aag |
303 |
Q |
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||| |
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| T |
39924347 |
aag |
39924345 |
T |
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