View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_11 (Length: 281)
Name: NF16783_low_11
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 53310978 - 53311207
Alignment:
| Q |
17 |
aataactaaggaaaaacatgaaatcaatcattcatttctctcttattccctcttttggtatgctttgtttgaatattttaaaacaactgacccagagtag |
116 |
Q |
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| T |
53310978 |
aataactaaggaaaaacatgaaatcaatcattcatttctctcttactccctcttttggtatgctttgtttgaat-----------------ccagagtag |
53311060 |
T |
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| Q |
117 |
aatgaaatgtaattatcactctattttttggataggaaaatgcttaccataacaacaaatagtatcacgatcgaggagattacatacaatagaatcaata |
216 |
Q |
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| T |
53311061 |
aatgaaatgtaattatcactctattttttggacaggaaaatgcttaccataacaacaaatagtatcacga----ggagattacatacaatagaatcaata |
53311156 |
T |
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| Q |
217 |
gcactgcacacttgaaagtttgaccttaataacacccattacctccttctt |
267 |
Q |
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| T |
53311157 |
gcactgcacacttgaaagtttgaccttaataacacccattacctccttctt |
53311207 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 9009628 - 9009671
Alignment:
| Q |
221 |
tgcacacttgaaagtttgaccttaataacacccattacctcctt |
264 |
Q |
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| T |
9009628 |
tgcacacttgaaagtttgaccataataacacccacaacctcctt |
9009671 |
T |
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