View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_13 (Length: 252)
Name: NF16783_low_13
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 14202899 - 14202695
Alignment:
| Q |
49 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
148 |
Q |
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| T |
14202899 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
14202800 |
T |
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| Q |
149 |
ctataaagtatttccgtagcagctaagtaatttttatag-nnnnnnnnnccttaaccatccaattctaataagggaaagggggcattaattaataatttc |
247 |
Q |
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| T |
14202799 |
ctataaagtatttccgtagcagctaagtaatttttatagttttttttttccttaaccatccaattctaataagggaaaggggacattaattaataatttc |
14202700 |
T |
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| Q |
248 |
gaatt |
252 |
Q |
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||||| |
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| T |
14202699 |
gaatt |
14202695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 14202932 - 14202897
Alignment:
| Q |
127 |
atgtttattctcactctttgaactataaagtatttc |
162 |
Q |
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| T |
14202932 |
atgtttattctcactctttgaactataaagtatttc |
14202897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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