View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_16 (Length: 241)
Name: NF16783_low_16
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 39539002 - 39538828
Alignment:
| Q |
15 |
aagggtttaggcattgaatctagaagcttggagactcctggttccaagggtttggtcgccttgtaacaagcttgacacatagcagctcttgcatataaag |
114 |
Q |
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| T |
39539002 |
aagggtttaggcattgaatctagaagcttggaggctcctggttccaagggtttggtcgccttgtaacaagcttgacacatagcagctcttgcatataaag |
39538903 |
T |
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| Q |
115 |
gatatatgcagagacagaagaaaatcaaagaaaagaaatttggcctttccttttccaacagtcgacttgaacagg |
189 |
Q |
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| T |
39538902 |
gatatatgcagagacagaagaaaatcaaagaaaagaaatttggcctttccttttgcaacagtcgacttgaacagg |
39538828 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 2553383 - 2553459
Alignment:
| Q |
71 |
cgccttgtaacaagcttgacacatagcagctcttgcatataaaggatatatgcagagacagaagaaaatcaaagaaa |
147 |
Q |
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||||||||||||||||||||| | ||||||| |||||| ||||||||| |||| || ||||||||| ||||||| |
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| T |
2553383 |
cgccttgtaacaagcttgacaaagagcagcttttgcatgcaaaggatatctgcaaaggtggaagaaaattaaagaaa |
2553459 |
T |
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