View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_17 (Length: 240)
Name: NF16783_low_17
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 27350161 - 27350370
Alignment:
| Q |
14 |
agaccaaaacgtggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatctt |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27350161 |
agaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatctt |
27350260 |
T |
|
| Q |
114 |
tatcttcttctaagaaacatattgctgctggattccctttgaatgctgtctccgtgaatgtgtcaacctacgcatatctcatcactcacagtcagacaac |
213 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
27350261 |
tatcttcttctaagaaacacactgctgctggattccctttgaatgctgtctccgtgaatgcgtcaacctaagcatatctcatcactcacagtcagacaac |
27350360 |
T |
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| Q |
214 |
aaccataaaa |
223 |
Q |
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|||||||||| |
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| T |
27350361 |
aaccataaaa |
27350370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 27325130 - 27325288
Alignment:
| Q |
13 |
gagaccaaaacgtggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatct |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27325130 |
gagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgcttgcaaccattcatcatct |
27325229 |
T |
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| Q |
113 |
ttatcttcttctaagaaacatattgctgctggattccctttgaatgctgtctccgtgaa |
171 |
Q |
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| T |
27325230 |
ttatcttcttctaagaaacacactgctgctggattccctttgaatactgtctctgtgaa |
27325288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 32169006 - 32169153
Alignment:
| Q |
14 |
agaccaaaacgtggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatctt |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
32169006 |
agaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagcagctactaattgcaaccattcatcatctt |
32169105 |
T |
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| Q |
114 |
tatcttcttctaagaaacatattgctgctggattccctttgaatgctg |
161 |
Q |
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|||||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
32169106 |
tatcttcttctagtaaacacactgctgctggattccctttgaatgctg |
32169153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 32165215 - 32165383
Alignment:
| Q |
14 |
agaccaaaacgtggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatctt |
113 |
Q |
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||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
32165215 |
agaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttccgagatgttgaattcagcagctactgattgcaaccattcatcatctt |
32165314 |
T |
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| Q |
114 |
tatcttcttctaagaaacatattgctgctggattccctttgaatgctgtctccgtgaatgtgtcaacct |
182 |
Q |
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| T |
32165315 |
tatcttcttctaataaacacacagctgctggattccctttgaatgctgaatcggtgaatgcatcaacct |
32165383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 27358296 - 27358153
Alignment:
| Q |
30 |
tagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaaccattcatcatctttatcttcttctaagaa |
129 |
Q |
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|||||||||||||||||||| | |||||||| || || | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
27358296 |
tagaggttccatgaataggaattaaataacaagtcataggcatattgaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataa |
27358197 |
T |
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| Q |
130 |
acatattgctgctggattccctttgaatgctgtctccgtgaatg |
173 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
27358196 |
acatactgctgctggattccctttgaatgctgtctcagtgaatg |
27358153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 44288321 - 44288217
Alignment:
| Q |
67 |
agagacattgaattcagcagctaatgattgcaaccattcatcatctttatcttcttctaagaaacatattgctgctggattccctttgaatgctgtctcc |
166 |
Q |
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||||| |||||| ||||| ||||||| |||||||||||||||||| | ||||||||||| ||||| | |||||| || || || ||||| |||| ||| |
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| T |
44288321 |
agagatattgaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtttcccttgaacgctgactca |
44288222 |
T |
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| Q |
167 |
gtgaa |
171 |
Q |
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||||| |
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| T |
44288221 |
gtgaa |
44288217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 29697704 - 29697614
Alignment:
| Q |
13 |
gagaccaaaacgtggaatagaggttccatgaatagga---gtcaaataacatgtttgagagacattgaattcagcagctaatgattgcaac |
100 |
Q |
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|||||||||||| ||| || ||| || |||||||||| || |||||||| |||| ||| | ||||||||||||| ||||||||||||| |
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| T |
29697704 |
gagaccaaaacggggattaaaggctctatgaataggataagttaaataacaggtttcagatatattgaattcagcacttaatgattgcaac |
29697614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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