View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_18 (Length: 238)
Name: NF16783_low_18
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_18 |
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| [»] scaffold0429 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1446755 - 1446547
Alignment:
| Q |
1 |
tatctttgagaaatatcattaatttacttcaatgttgaagaagaggttcgtttcttattctcacaattttcttattccatttcaaattttcaatcactct |
100 |
Q |
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| T |
1446755 |
tatctttgagcaatatcattaatttacttcaatgttgaagaagaggttcgtttcttattctcacaattttcttattccatt--------tcaatcactct |
1446664 |
T |
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| Q |
101 |
catcttcgagtagggcttcnnnnnnncaatctctgcatccatttattcccaaacagaatcatgttaatattaattgatgatgctgtttcctcatttcatt |
200 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
1446663 |
catcttcgagtagggctcctttttttcaatctctgcatccatttattcccaaacagaatcatgttaat----attgatgatgctgtttcctgatttcatt |
1446568 |
T |
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| Q |
201 |
gcttgcttcgcatgcgtccca |
221 |
Q |
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| T |
1446567 |
gcttgcttcgcatgcgtccca |
1446547 |
T |
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Target: scaffold0429 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 4972 - 5034
Alignment:
| Q |
23 |
tttacttcaatgttgaagaagaggttcgtttcttattctcacaattttcttattccatttcaa |
85 |
Q |
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| T |
4972 |
tttacttcaatgttgaacaagaggttcgtttcttactctcacaattttctcattgcatttcaa |
5034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 122676 - 122614
Alignment:
| Q |
23 |
tttacttcaatgttgaagaagaggttcgtttcttattctcacaattttcttattccatttcaa |
85 |
Q |
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| T |
122676 |
tttacttcaatgttgaagaacaggttcgtttcttaccctcacagttttctcattccatttcaa |
122614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 3641841 - 3641890
Alignment:
| Q |
30 |
caatgttgaagaagaggttcgtttcttattctcacaattttcttattcca |
79 |
Q |
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||||||||||||| |||||| ||| ||| ||| ||||||||||||||||| |
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| T |
3641841 |
caatgttgaagaacaggttcatttattactctaacaattttcttattcca |
3641890 |
T |
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