View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_19 (Length: 228)
Name: NF16783_low_19
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 2189279 - 2189085
Alignment:
| Q |
16 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
115 |
Q |
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| T |
2189279 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaacca |
2189180 |
T |
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| Q |
116 |
actgccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
210 |
Q |
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| T |
2189179 |
actgccatatctcataatggccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
2189085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 36614163 - 36614357
Alignment:
| Q |
16 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36614163 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaacca |
36614262 |
T |
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| Q |
116 |
actgccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
210 |
Q |
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| T |
36614263 |
actgccatatctcataatggccgtttttagtattggaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
36614357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 36647823 - 36648018
Alignment:
| Q |
16 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaacca |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
36647823 |
aaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaagcattgagaagaataatcctcggaaacca |
36647922 |
T |
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| Q |
116 |
actgccatatctcataatg-gccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
210 |
Q |
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| T |
36647923 |
actgccatatctcataatgatccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggt |
36648018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 40224323 - 40224184
Alignment:
| Q |
78 |
ggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatctcataatgg-ccgtttttagaatttgaaa---------gcataacatcttc |
167 |
Q |
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||||||| | ||||||||||||||||| ||||||||||||||||| | | ||| ||| || ||||||| |||||||| ||| | ||||||| |
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| T |
40224323 |
ggaaagctagcattgagaagaataatcctcggaaaccaactgccacaccccatgatgatccatttttagtatttgaaacttcttcaagcacagcatcttc |
40224224 |
T |
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| Q |
168 |
aaaatcattcctggactcattagagcaaatcactaagaat |
207 |
Q |
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| T |
40224223 |
agaatcattcctggactcattagagcaaatcactaagaat |
40224184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40225442 - 40225379
Alignment:
| Q |
16 |
aaaatagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatggg |
79 |
Q |
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||||| ||||||||||| |||||||||| | | ||||||||||||||| | |||||||||||| |
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| T |
40225442 |
aaaatcgcatgattttggtgacttcatgtctggctttggtggaagcagcgtttccaataatggg |
40225379 |
T |
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