View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16783_low_2 (Length: 510)
Name: NF16783_low_2
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_2 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 102824 - 103308
Alignment:
| Q |
18 |
aagagattcttcgttacatttactgtcaccaagtatgtgctatctatctaccattgcttcttttgctacttaattaccggtgaaatttgagattgaacga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
102824 |
aagagattcttcgttacatttactgtcaccaagtatgtgctatctatctaccattgcttcttttgctacttaattacccgtgaaatttgatattgaacga |
102923 |
T |
|
| Q |
118 |
acatgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102924 |
acatgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgta |
103023 |
T |
|
| Q |
218 |
tgcgaattctcggagaaggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
103024 |
tgcgaattctcggagaaggacctgatggcggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttc |
103123 |
T |
|
| Q |
318 |
atggggaaaaacttggctttcggtacctaccattcatttctatgcaatattaatatttaaccgaaaatatttatgttactaatttgaatgtatcatttac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
103124 |
atggggaaaaacttggctttcggtacctaccattcatttctatgcaatattaatatttaaccgaaaatatttatgttactaatttgaatgtatcatttac |
103223 |
T |
|
| Q |
418 |
ctatagatacttggtctctttgattggttgagaagcaacccaatgtcccctgagttttgtatctttccttcatttcttcctatgc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
103224 |
ctatagatacttggtctctttgattggttgggaagcaacccaatgccccctgagttttggatccttccttcatttcttcctatgc |
103308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 121 - 351
Target Start/End: Original strand, 162107 - 162337
Alignment:
| Q |
121 |
tgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgc |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
162107 |
tgttgtgggttcattttgaagaatgaagatggtggatgggggctacaaattgagggtcacagtaccatgttttgtactgcactcaactatatatgtatgc |
162206 |
T |
|
| Q |
221 |
gaattctcggagaaggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatg |
320 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||| |
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|
| T |
162207 |
ggattcttggagaaggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgtgatcacggtggtgtaacacgtataccttcatg |
162306 |
T |
|
| Q |
321 |
gggaaaaacttggctttcggtacctaccatt |
351 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |
|
|
| T |
162307 |
ggggaaaacttggctttcggtagctaccatt |
162337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 502
Target Start/End: Original strand, 162459 - 162579
Alignment:
| Q |
385 |
tatttatgttactaatttgaat---gtatcatttacctatagatacttggtctctttgattggttgagaagcaacccaatgtcccctgagttttgtatct |
481 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||||||||||| | | |||||||| | |||||||||||||| ||||||||||||| ||| |
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|
| T |
162459 |
tatttatgttacttatttgaataatgtatcctttacgtatagatacttggtgtatatgattggtcgggaagcaacccaatgccccctgagttttggatcc |
162558 |
T |
|
| Q |
482 |
ttccttcatttcttcctatgc |
502 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
162559 |
ttccttcatttcttcctatgc |
162579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 161925 - 161968
Alignment:
| Q |
18 |
aagagattcttcgttacatttactgtcaccaagtatgtgctatc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
161925 |
aagagattcttcgttacatttactgtcaccaggtaggtgttatc |
161968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 135 - 342
Target Start/End: Original strand, 13051841 - 13052048
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||| |
|
|
| T |
13051841 |
tttgaagaatgaagatggagggtggggtctacacattgagggtcacagcaccatgttttgtactgcactgaactatatatgcctgagaattcttggagaa |
13051940 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| || |||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
13051941 |
gggccggatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacgcatataccttcatggggaaaaacttggc |
13052040 |
T |
|
| Q |
335 |
tttcggta |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
13052041 |
tttcggta |
13052048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 502
Target Start/End: Original strand, 13052179 - 13052260
Alignment:
| Q |
421 |
tagatacttggtctctttgattggttgagaagcaacccaatgtcccctgagttttgtatctttccttcatttcttcctatgc |
502 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||||| ||| ||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
13052179 |
tagatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcatttcttcctatgc |
13052260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 135 - 502
Target Start/End: Complemental strand, 93434 - 93058
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||||| ||| || |
|
|
| T |
93434 |
tttgcagaatgaagatggagggtgggggctacacattgagggtcacagcatcatgttttctactgcactcaactacatatgtatgcggattcttggacaa |
93335 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||||||||| ||| |||||||||| | || |||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
93334 |
ggtcctgatggcggtcaaaacaatgcttgtgctagagcaagacactggattcgtgttcatggtggtgtaacacatataccttcatggggaaaaacatggc |
93235 |
T |
|
| Q |
335 |
tttcggtacctaccattcatttctat----gcaatattaatattt----aaccgaaaatat-ttatgttactaatttgaatgtatcatttacctatagat |
425 |
Q |
| |
|
|||||||| |||| || ||| ||| |||||| || || | || | || |||| |||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
93234 |
tttcggtaggtaccgtttttttttattcaatcaatataaaaatgtctgcaaactaacatataatatgtttctaatttgaatatatcttttacctatagat |
93135 |
T |
|
| Q |
426 |
acttggtctctttgattggttgagaagcaacccaatgtcccctgagttttgtatctttccttcatttcttcctatgc |
502 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | ||||| ||||| || ||||||||||||| ||||||| |
|
|
| T |
93134 |
acttggtctttttgattggagtggaagcaacccaatgccacctgaattttggctccttccttcatttctccctatgc |
93058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 135 - 342
Target Start/End: Complemental strand, 12138322 - 12138115
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
||||||||||||||||||||| | || ||||||| |||||||| || |||||||||||||| |||| || |||||||||||||||||||| |||||| |
|
|
| T |
12138322 |
tttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggagaa |
12138223 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||| | || |||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
12138222 |
gggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggc |
12138123 |
T |
|
| Q |
335 |
tttcggta |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
12138122 |
tttcggta |
12138115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 135 - 342
Target Start/End: Complemental strand, 5671057 - 5670850
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | |||||||||| | |||||||||||||| ||| ||||| |||||||||||||| || |||||| |
|
|
| T |
5671057 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacaatatcatgttttgtactgtactcaactacatatgtatgcgaatacttggagaa |
5670958 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| || |||||||| |||| ||||||||||||| ||| ||||| ||||||| | || |||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
5670957 |
ggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatttggc |
5670858 |
T |
|
| Q |
335 |
tttcggta |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
5670857 |
tttcggta |
5670850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 135 - 342
Target Start/End: Complemental strand, 5692803 - 5692596
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | ||| ||||| ||||| |||||||| || |||||| |
|
|
| T |
5692803 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtacagtactcaactacatatgcatgcgaatacttggagaa |
5692704 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| || |||||||| |||| ||||||||||||| ||| ||||| ||||||| | || |||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
5692703 |
ggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaattttggc |
5692604 |
T |
|
| Q |
335 |
tttcggta |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
5692603 |
tttcggta |
5692596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 135 - 342
Target Start/End: Complemental strand, 5723147 - 5722940
Alignment:
| Q |
135 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | ||||||||| ||||| |||||||| || |||||| |
|
|
| T |
5723147 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtaccgtacttaactacatatgcatgcgaatacttggagaa |
5723048 |
T |
|
| Q |
235 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
334 |
Q |
| |
|
|| || |||||||| |||| ||||||||||||| ||| ||||| ||||||| | || |||||||| ||||| | ||||||||||||||| |||| |
|
|
| T |
5723047 |
ggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtgtcttcatggggaaaaatctggc |
5722948 |
T |
|
| Q |
335 |
tttcggta |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
5722947 |
tttcggta |
5722940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 5670754 - 5670680
Alignment:
| Q |
422 |
agatacttggtctctttgattggttgagaagcaacccaatgtcccctgagttttgtatctttccttcatttcttc |
496 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||||||| || |||| |||||||||| |
|
|
| T |
5670754 |
agatacttggtatctttgattggcgtgcaagcaacccaatgccccctgagttttggatgcttccctcatttcttc |
5670680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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