View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_20 (Length: 227)
Name: NF16783_low_20
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 1447116 - 1446894
Alignment:
| Q |
5 |
cctaaactttcctataaaaatgatcaaaccaaataannnnnnngaattaagacctaaactttccaacttaattgcacaaagatttccttctataaaaata |
104 |
Q |
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| T |
1447116 |
cctaaactttcctataaaaatgatcaaaccaaataatttttttgaattaagacctaaactttccaacttaattgcataaagatttccttctataaaaata |
1447017 |
T |
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| Q |
105 |
tgattgacaatgaagctcattgataaagtaagacgtatgctactaagccattaacaagggtatttgttcctagtgttcttgctatgattaacaggtattt |
204 |
Q |
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| T |
1447016 |
tgattaacaatgaagctcattgataaagtaagacgtatgctactaagccattaacaagggtatttgttcctagtgttcttgctatgattaacaggtattt |
1446917 |
T |
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| Q |
205 |
tcttaggtaatatgctatgagaa |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
1446916 |
tcttaggtaatatgctatgagaa |
1446894 |
T |
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