View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16783_low_22 (Length: 225)

Name: NF16783_low_22
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16783_low_22
NF16783_low_22
[»] chr4 (6 HSPs)
chr4 (1-225)||(35646017-35646241)
chr4 (1-225)||(35676513-35676737)
chr4 (116-225)||(35655548-35655657)
chr4 (1-37)||(35655445-35655481)
chr4 (116-164)||(35641212-35641260)
chr4 (121-169)||(35673178-35673226)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35646017 - 35646241
Alignment:
Q  1 tcttctcttcattccctatgcttttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646017 tcttctcttcattccgtatgcttttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttc 35646116  T
Q  101 taccaccnnnnnnnncttacctccttcacctccaagaattcctctacttggtaacctccatcaatttggtttgtttccttaccgcacactccacacttta 200  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646117 taccaccaaaaaaaacttacctccttcacctccaagaattcctctacttggtaacctccatcaatttggtttgtttccttaccgcacactccacacttta 35646216  T
Q  201 tctcacaaatatggccctttaatgc 225  Q
    |||||||||||||||||||||||||    
T  35646217 tctcacaaatatggccctttaatgc 35646241  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35676513 - 35676737
Alignment:
Q  1 tcttctcttcattccctatgcttttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||     
T  35676513 tcttctcttcattccctatgctcttcttcactatctttccactattcctcatttctctttttgccatcataaaatattggcataattccaacaattcttg 35676612  T
Q  101 taccaccnnnnnnnncttacctccttcacctccaagaattcctctacttggtaacctccatcaatttggtttgtttccttaccgcacactccacacttta 200  Q
    | |||||        |||||||||||||||||||||| |||||||||||||||||||||| ||| |||| || || ||| |  |||||||||| | ||||    
T  35676613 tgccaccaaaaaaaacttacctccttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaattta 35676712  T
Q  201 tctcacaaatatggccctttaatgc 225  Q
     ||||||||||||||||||||||||    
T  35676713 gctcacaaatatggccctttaatgc 35676737  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 35655548 - 35655657
Alignment:
Q  116 cttacctccttcacctccaagaattcctctacttggtaacctccatcaatttggtttgtttccttaccgcacactccacactttatctcacaaatatggc 215  Q
    |||||| ||||||||||||||| ||||| |||||||||| || |||||| ||||| |||  ||| || |  |||||||   |||| ||||||||||||||    
T  35655548 cttaccaccttcacctccaagatttcctatacttggtaatcttcatcaaattggtgtgtcccctcacagatcactccaagatttagctcacaaatatggc 35655647  T
Q  216 cctttaatgc 225  Q
    ||||||||||    
T  35655648 cctttaatgc 35655657  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35655445 - 35655481
Alignment:
Q  1 tcttctcttcattccctatgcttttcttcactatctt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35655445 tcttctcttcattccctatgcttttcttcactatctt 35655481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 35641212 - 35641260
Alignment:
Q  116 cttacctccttcacctccaagaattcctctacttggtaacctccatcaa 164  Q
    |||||| ||||||||||||||| | ||| |||||||||| |||||||||    
T  35641212 cttaccaccttcacctccaagattccctttacttggtaatctccatcaa 35641260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 35673178 - 35673226
Alignment:
Q  121 ctccttcacctccaagaattcctctacttggtaacctccatcaatttgg 169  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||| ||||    
T  35673178 ctccttcacctccaagatttcctctagttggcaacttccatcaacttgg 35673226  T

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