View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16783_low_3 (Length: 444)
Name: NF16783_low_3
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Complemental strand, 2440576 - 2440162
Alignment:
| Q |
10 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2440576 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacactgctcatagttctcaagcctaaacaattga |
2440477 |
T |
|
| Q |
110 |
ttgataatttccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2440476 |
ttgataatttccctgaaatggcaccttcttccctctaacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaagaccaata |
2440377 |
T |
|
| Q |
210 |
tatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaatat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2440376 |
tatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaatat |
2440277 |
T |
|
| Q |
310 |
ctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatgaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2440276 |
ctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatgaa |
2440177 |
T |
|
| Q |
410 |
gcgcaaactgtcaaa |
424 |
Q |
| |
|
||||||||||||||| |
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|
| T |
2440176 |
gcgcaaactgtcaaa |
2440162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 41665289 - 41665690
Alignment:
| Q |
10 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
109 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||| |
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|
| T |
41665289 |
gcacagagtgctacgaatctcctgatgatcaatgttagagcccttggtctttcttgcttcaaacgaacactgctcatagttctcaagcccaaacaattga |
41665388 |
T |
|
| Q |
110 |
ttgataatttccc--tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaa |
207 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||| |||| ||| | |
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|
| T |
41665389 |
ttgataattttctcatgaaatggcaccttcttccctctcacaaaactagtgaatttcatcagatcattctcatagttcccatcttctttggcagtaccca |
41665488 |
T |
|
| Q |
208 |
tatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||| ||| ||||| |
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|
| T |
41665489 |
tatatgcatttgcaaagaactctttagctaatgtcgcactagcctcttttgcaaatgatgtcaatttgccccatcctctggccactatcattgcctgaat |
41665588 |
T |
|
| Q |
308 |
atctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatg |
407 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| |||||| |||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41665589 |
atctgagaatttgtccccttccaaccagaaatttttttctaacacaaactttttgttggttagaaacttcgaatagcgctcttgatggaccattgatatg |
41665688 |
T |
|
| Q |
408 |
aa |
409 |
Q |
| |
|
|| |
|
|
| T |
41665689 |
aa |
41665690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 41656528 - 41656943
Alignment:
| Q |
10 |
gcacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||| ||||||| || |
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|
| T |
41656528 |
gcacagagtactaagaatctcctgatgatcaatgttagatccctttgcctttcttgcttcaaatgaacactgctcatagttctctagcccaaacaatcga |
41656627 |
T |
|
| Q |
110 |
ttgataatttccc--tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaa |
207 |
Q |
| |
|
|||||||||| | |||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
41656628 |
ttgataattttctcatgaaatggcaccatcttgcctctgacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccca |
41656727 |
T |
|
| Q |
208 |
tatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||||| ||||| | | ||||| |
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|
| T |
41656728 |
gatatgcatttgcaaagaactctttagctaatg-ggcactagcctcttttgcaaatgttgtcagatccccccatcctctggtcactatcatttcctgaat |
41656826 |
T |
|
| Q |
308 |
atctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatg |
407 |
Q |
| |
|
|||||| ||||||| |||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41656827 |
atctgagaatttgtacccttccaactggaattttttttctaatacaaactttttgttggccagaaacttcgaatagtgctcttgatggaccaatgatatg |
41656926 |
T |
|
| Q |
408 |
aagcgcaaactgtcaaa |
424 |
Q |
| |
|
||| | ||| ||||||| |
|
|
| T |
41656927 |
aagtgaaaattgtcaaa |
41656943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 41706521 - 41706904
Alignment:
| Q |
11 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||| |||| |||||||||||||||||||| |||||||| || |
|
|
| T |
41706521 |
cacagagtactacgaatctcctgatgatcaatgttagaacccttggcctttcttgcttcaaaggaacactgctcatagttctcaagcccaaacaattcat |
41706620 |
T |
|
| Q |
111 |
tgataatttc--cctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaat |
208 |
Q |
| |
|
||||||| | | |||||||| || ||||||||||| | |||| ||||||||||||| ||||||||| ||||| || |
|
|
| T |
41706621 |
tgataatattatcatgaaatggaacattcttccctctgataaaactagtgaatttcattcgctcattctta------------------gcagggccctg |
41706702 |
T |
|
| Q |
209 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||| | ||||| | |||| ||| |
|
|
| T |
41706703 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcatcttttgcaaacgatgtcaattccacccatcctctggacactatcattacttggata |
41706802 |
T |
|
| Q |
309 |
tctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatga |
408 |
Q |
| |
|
||| | ||||||| ||||||||||||||||||||| ||| | |||| ||||||| ||||||||||| ||||||||||||||||| ||| ||||| ||| |
|
|
| T |
41706803 |
tctaagaatttgttcccttccaaccggaaatttttttcttccacaaactttttgttggccagaaactcagaatagcgctcttgatgaaccgatgatgtga |
41706902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 41648438 - 41648817
Alignment:
| Q |
11 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| |||| || ||||| ||||||||||| ||||||||||| |
|
|
| T |
41648438 |
cacagagtactgtgaatctcctgatgatcaatgttagagcccttggtctttcttgtttcaaaggaacactcctcattgttctcaagcccaaacaattgat |
41648537 |
T |
|
| Q |
111 |
tgataatttc--cctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaat |
208 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| |||||| ||||||||| ||| | ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
41648538 |
tgataattttatcatgaaatggaaccttcttccctctcacaaaactagtgaattgcattagatcattcttattgttcccatcttctttagtaggaccctg |
41648637 |
T |
|
| Q |
209 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaata |
308 |
Q |
| |
|
||||||||||||| | || |||||||| ||||| |||| |||||||| ||||| |||||||||| | || ||||||| | ||| |||||||||| |
|
|
| T |
41648638 |
atatgcatttgcagacaattctttagcaaatgttgtacaagcctcttctgcaagctatgtcaattccactcatcctctggccactat---tgcttgaata |
41648734 |
T |
|
| Q |
309 |
tctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttg |
391 |
Q |
| |
|
||||| |||| ||||||||||| | ||| ||||| |||| | |||| ||||| ||| |||||||| |||||||| ||||| |
|
|
| T |
41648735 |
tctgagaattcttccccttccaaacagaattttttttctagcacaaactttttactggcaagaaacttagaatagcggtcttg |
41648817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 41716324 - 41716707
Alignment:
| Q |
11 |
cacagagtactaagaatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgat |
110 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||| |||||| | ||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
41716324 |
cacaaagtactacgaatctcctgatgatcaacgttagaacccttggcctttcttgcttcaaatgaacacttctcatagttctcaagcctaaacatttgat |
41716423 |
T |
|
| Q |
111 |
tgataattt--ccctgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaat |
208 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
41716424 |
tgataattttatcatgaaatggaaccttcttccctctgacaaaactagtgaatttcattcgatcattc------------------ttagcaggaccctg |
41716505 |
T |
|
| Q |
209 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||| ||||||| ||||| | |||||| |
|
|
| T |
41716506 |
atatgcatttgcaaagaactctttagctattgtcgtactagcatcttttgcaaacgatgtcaattccacccatcctctggattctatcattttatgaata |
41716605 |
T |
|
| Q |
309 |
tctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgatatga |
408 |
Q |
| |
|
|| |||||| |||||||||| ||||||| || ||| | |||| ||||||| ||||||||||| ||||| |||| |||||| ||||||||| ||| |
|
|
| T |
41716606 |
cacgagaatttgctcccttccaactggaaattgttttctcccacaaactttttgttggccagaaactcagaataacgcttttgatgaaccaatgatgtga |
41716705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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