View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16783_low_4 (Length: 430)
Name: NF16783_low_4
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_4 |
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| [»] scaffold0299 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 46524113 - 46524470
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524113 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
46524212 |
T |
|
| Q |
101 |
ttagaattatacactacctagagaatttgagagattttggatactctactttctgacttgttctttgggacaaccaaatcattttttatggttaaactat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46524213 |
ttagaattatacactacctagagaatttgagagattttggatattctactttctgacttgttctttgggacaaccaagtcattttttatggttaaactat |
46524312 |
T |
|
| Q |
201 |
acatgaattacttatttctttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaagcaatgcattccgaatcttggcgtggaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524313 |
acatgaattacttatttctttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaagcaatgcattccgaatcttggcgtggaact |
46524412 |
T |
|
| Q |
301 |
gcagtttttgaaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatataga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46524413 |
gcagtttttgaaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatataga |
46524470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 183 - 401
Target Start/End: Original strand, 49883912 - 49884123
Alignment:
| Q |
183 |
tttttatggttaaactatacatgaattacttatttctttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaagcaatgcattcc |
282 |
Q |
| |
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||||| ||| |||||||| ||| ||| ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
49883912 |
tttttttggctaaactatgcataaataact-atttctttatatttattttgattttgcagggatctgaagaagcatatagaatcgaaagcaatgcattcc |
49884010 |
T |
|
| Q |
283 |
gaatcttggcgtggaactgcagtttttgaaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatatagatagagttcacagtcgacaacaata |
382 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
49884011 |
gaatcttggcgtggaactgcagttattgaaagcgacgcagcagtcgttgatcaatgattctttgtgaat------atagagttcacagtcaacaacaata |
49884104 |
T |
|
| Q |
383 |
agctactatacagctttca |
401 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
49884105 |
agctactatacagctttca |
49884123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 49883702 - 49883840
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||| || ||||| |||||||||||| | |
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|
| T |
49883702 |
ggctgtcagcactgtaaaaagatatggtttatactaactgcccactccaggaattgcaaagactcggaatgtagaataccacgttgcaggtgtgttactg |
49883801 |
T |
|
| Q |
101 |
ttagaattatacactacctagagaatttgagagattttg |
139 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |||| |
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|
| T |
49883802 |
ttagaattctacactacctatagaatttgagagaatttg |
49883840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 2943584 - 2943532
Alignment:
| Q |
219 |
tttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaag |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
2943584 |
tttatatttatgtcgattttgcagggatctgaagaagcatatagaatcgaaag |
2943532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6160750 - 6160622
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgca-ggtgtgttgtt |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| || ||||| |||| |||||||| |
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|
| T |
6160750 |
ggctgccagcattgtaaaaagatatggtttatactaacttctcactccaggaattgcaaagactcggaatgtagaataccacgctgcagggtgtgttaca |
6160651 |
T |
|
| Q |
100 |
tttagaattatacactacctagagaattt |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
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|
| T |
6160650 |
gttagaattctacactacctagagaattt |
6160622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 36846300 - 36846205
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgtt |
96 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||| || ||||||||||||||||| ||||| || ||||| |||||||||||| |
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|
| T |
36846300 |
ggctgccagcattgtaagaagatatggtttatactaactgctcactccagaaattgcaaagactcggaatgtagaataccacgttgcaggtgtgtt |
36846205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 358
Target Start/End: Complemental strand, 36846129 - 36845980
Alignment:
| Q |
209 |
tacttatttctttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaagcaatgcattccgaatcttggcgtggaactgcagtttt |
308 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| ||| | ||||||||| ||||| |||| |||||||||| |||||||| ||| || ||| |||||| |
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|
| T |
36846129 |
tacttattcttttatattgatgtcgattttgcagtgatttgaagaagcatgtagaacagaaatcaatgcattctgaatcttgacgtagagctgaagtttt |
36846030 |
T |
|
| Q |
309 |
tgaaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatataga |
358 |
Q |
| |
|
||||| || | |||||| || ||||||||||||||||||||||||| |
|
|
| T |
36846029 |
ggaaagcgatggaacagtcgctggccaatgaatctttgtgaatatataga |
36845980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 358
Target Start/End: Complemental strand, 6160526 - 6160377
Alignment:
| Q |
209 |
tacttatttctttatatttatgttgattttgcagggatctaaagaagcatctagaatcgaaagcaatgcattccgaatcttggcgtggaactgcagtttt |
308 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||| | ||||| ||| ||||| |||| || ||||||| |||||||| || || ||| |||||| |
|
|
| T |
6160526 |
tacttattcttttataattatgttgattttgcagtgatatgaagaaccatgtagaacagaaatcagtgcattctgaatcttgctgtagagctgaagtttt |
6160427 |
T |
|
| Q |
309 |
tgaaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatataga |
358 |
Q |
| |
|
||||| || |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
6160426 |
ggaaagcgatggagcaatcgttggccaatgaatctttgtgaatatataga |
6160377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 36856432 - 36856346
Alignment:
| Q |
311 |
aaagtgacaaagcagtcgttgatcaatgaatctttgtgaatatatagatagagttcacagtcgacaacaataagctactatacagctttca |
401 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||| ||||||||| ||| ||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
36856432 |
aaagtggcaatgaagtcgttgatcaatgaatcttcgtgaatataaaga----gttcacagtaaacaactataagctactatacagctttca |
36856346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 18137214 - 18137342
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
100 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||| |
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|
| T |
18137214 |
ggctgccagcattgtatgaagatatcgtttatacaaactgctcactccaggaattgcaaagactcggaacgtagaataccacgctgcaggtgtgttacaa |
18137313 |
T |
|
| Q |
101 |
ttagaattatacactacctagagaatttg |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
18137314 |
ttagaattctacactacctagagaatttg |
18137342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16848 - 16975
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| || | ||||| ||||||||||||||||| || ||||| || || || |||||||||||| |
|
|
| T |
16848 |
ggctgccagcattgtaaaaaaatatggtttatactaactacgcactccaggaattgcaaagactcagaatgtagaataccgcgttgcaggtgtgttacaa |
16947 |
T |
|
| Q |
101 |
ttagaattatacactacctagagaattt |
128 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
16948 |
ttagaattctacactgcctagagaattt |
16975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 358
Target Start/End: Original strand, 17047 - 17189
Alignment:
| Q |
219 |
tttatatttatgttgattttgcagggatctaaagaagcatctag---aatcgaaagcaatgcattccgaatcttggcgtggaactgcagtttttgaaagt |
315 |
Q |
| |
|
|||||||| || |||||||||||| ||||| ||||||||| ||| || || | ||||||||| |||||||| ||| || ||| |||||| ||||| |
|
|
| T |
17047 |
tttatattgatattgattttgcagtgatctgaagaagcatgtagtagaacagagatcaatgcattatgaatcttgtcgtagagctgaagttttggaaagc |
17146 |
T |
|
| Q |
316 |
gacaaagcagtcgttgatcaatgaatctttgtgaatatataga |
358 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
17147 |
gacggagcagtcattggtcaatgaatctttgtgaatatataga |
17189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6681378 - 6681473
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgtt |
96 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||||||||| || ||||||||||||| ||| ||||| || || || |||||||||||| |
|
|
| T |
6681378 |
ggctgccagcattgtaaaaagatatggtttgtactaactgctcactccagaaattgcaaagacttggaatgtagaataccgcgttgcaggtgtgtt |
6681473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6771685 - 6771558
Alignment:
| Q |
1 |
ggctgccagcagtgtaaaaagatatggtttatacttgctgctcactctaggaattgcaaagactcggagtgtagcattccacggtgcaggtgtgttgttt |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| | | ||||| ||| |||||||||||||||| ||||| || || || |||||||||||| |
|
|
| T |
6771685 |
ggctgcccgcattgtaaaaagatatggtttatactaacaacgcactccagggattgcaaagactcggaatgtagaataccgcgttgcaggtgtgttacaa |
6771586 |
T |
|
| Q |
101 |
ttagaattatacactacctagagaattt |
128 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
6771585 |
ttagaattctacactgcctagagaattt |
6771558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 6670716 - 6670786
Alignment:
| Q |
328 |
gttgatcaatgaatctttgtgaatatatagatagagttcacagtcgacaacaataagctactatacagctttc |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6670716 |
gttgatcaatgaatcttcgtgaatatata--tagagttcacagtaaacaacaaaaagctactatacagctttc |
6670786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 6771540 - 6771492
Alignment:
| Q |
210 |
acttatttctttatatttatgttgattttgcagggatctaaagaagcat |
258 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
6771540 |
acttattcttttatattgatgttgattttgcagtgatctgaagaagcat |
6771492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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