View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_5 (Length: 396)
Name: NF16783_low_5
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 1252055 - 1252419
Alignment:
| Q |
15 |
gtgcatatcaaattttgtagatatagaaacaacaatgaggagccattgatttgcatcaaattgatatatcaatcaactatagtaataacatatgatgctc |
114 |
Q |
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| T |
1252055 |
gtgcatataaaattttgtagatatagaaacaacaatgaggagccattgatttgcatcaaattgatatatcaatcaactatagtaataacgtatgatgctc |
1252154 |
T |
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| Q |
115 |
tatgtacgatatatagtcatgtatgtttatgtcaactgtatgggcaaccatacttactcccatttatttcttgctcaatttgtgcagagttcaaagatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1252155 |
tatgtacgatatatagtcatgtatgtttatgtcaactgtatgggcaaccatacttactcccatttatttcttgctcaatttgggcagagttcaaagatca |
1252254 |
T |
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| Q |
215 |
aaagagatcagggattcgtactctttatcattccttggtttgtcgcactttgtgttaagaagtcatcaataatagagcatgcggtgtggctttttatgtg |
314 |
Q |
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||||||||||| |||||||||||||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252255 |
aaagagatcagtgattcgtactctttatcattccatgttttgttgcac-ttgtgttcagaagtcatcaataatagagcatgcggtgtggctttttatgtg |
1252353 |
T |
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| Q |
315 |
atgggatcgtttccctatgcaactggacaaattgatgatagctcattcagttgtctaggaaggaca |
380 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252354 |
atgggatggtttccctatgcaactggacaaattgatgatagctcattcagttgtctaggaaggaca |
1252419 |
T |
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