View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_6 (Length: 374)
Name: NF16783_low_6
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 49729141 - 49729485
Alignment:
| Q |
17 |
actcacacatctcaggatttgtattcttcaagtaagtaattcaataagtttctgatgacaatgacagtgtgttgtgaacttgtgatcttagacaaactat |
116 |
Q |
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| T |
49729141 |
actcacacatctcaggatttgtattcttcaagtaagtaattcaataagtttctgatgacaatgacagtgtgttgt--------gatcttagacaaactat |
49729232 |
T |
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| Q |
117 |
gtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaatttcatgcattcacgtagtcagaaca |
216 |
Q |
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| T |
49729233 |
gtggcccaggaaaactttgggatatgctttttctaactaccactttatagattttgatttgttgcggtcacaaatttcatgcattcacgtagtcggaaca |
49729332 |
T |
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| Q |
217 |
ttagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccgattgagggtcacaaaagtactaa |
316 |
Q |
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| T |
49729333 |
tcagttaaaagttcagaaactaagaagattttgatttttaaactctaaattaccgagcttgcaatctgaatcatccgattgagggtcacaaaagtactaa |
49729432 |
T |
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| Q |
317 |
ctgcgttgactgcatataatctgtgactgaagcaaattctaattcttctcact |
369 |
Q |
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| T |
49729433 |
ctgcgttgactgcatataatctgtgactgaagcaaattctaattcttatcact |
49729485 |
T |
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