View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16783_low_8 (Length: 330)
Name: NF16783_low_8
Description: NF16783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16783_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 27945512 - 27945797
Alignment:
| Q |
16 |
atgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatct |
115 |
Q |
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| T |
27945512 |
atgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcaggggacgaaatatct |
27945611 |
T |
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| Q |
116 |
gtggagtggactcaatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaaccttcctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
27945612 |
gtggagtggactcaatggtttctactgtggctgctgctcacactaatactcagtgacagtagtatgttttccatctc--atacttgaaccaaccttcatt |
27945709 |
T |
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| Q |
216 |
tcaagacttgttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgt |
303 |
Q |
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| T |
27945710 |
tcaagacttgttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataatgtctcacttgt |
27945797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 27437020 - 27437318
Alignment:
| Q |
16 |
atgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatct |
115 |
Q |
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| T |
27437020 |
atgaaggagaaggagaagccgtattggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcagaggacgaaatatct |
27437119 |
T |
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| Q |
116 |
gtggagtggactcaatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaacc-----t |
210 |
Q |
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| T |
27437120 |
gtggagtggactcaatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgatttctatctc--atacatgtaccaaccttcatt |
27437217 |
T |
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| Q |
211 |
tcctttcaagacttgttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctc |
310 |
Q |
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| T |
27437218 |
tcatttcaagacttgttgaatatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacataatgtctcgcttgtaaagctc |
27437317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 27549201 - 27549020
Alignment:
| Q |
24 |
gaaggagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtg |
123 |
Q |
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| T |
27549201 |
gaaggagaagccgtattggattgttaaaagctcctggggcgagacgtggggagaaaatggatactataagatttgtaggggacgaaatatctgtggagtg |
27549102 |
T |
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| Q |
124 |
gactcaatggtttctactgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaa |
207 |
Q |
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| T |
27549101 |
gactcaatggtttctactgtggctgctgctcaaactacaactcactgactgtagtatgttttccatctc--atacttgaaccaa |
27549020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 26766356 - 26766496
Alignment:
| Q |
24 |
gaaggagaagccgtattggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtg |
123 |
Q |
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| T |
26766356 |
gaaggagaagccatattggataattaaaaactcatggggtgagacttggggagaaaatggatactataaaatatgcaggggacgaaatatctgcggagtg |
26766455 |
T |
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| Q |
124 |
gactcaatggtttctactgtggctgctgctcacactactac |
164 |
Q |
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| T |
26766456 |
gactctatggtttctactgtggctgccgttcatactactac |
26766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 27549022 - 27548952
Alignment:
| Q |
241 |
caatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctca |
311 |
Q |
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| T |
27549022 |
caatggttggcctcactatttcttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctca |
27548952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 27503968 - 27504001
Alignment:
| Q |
195 |
atacttgaaccaaccttcctttcaagacttgttg |
228 |
Q |
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| T |
27503968 |
atacttgaaccaaccttcatttcaagacttgttg |
27504001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 27504021 - 27504097
Alignment:
| Q |
226 |
ttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttg |
302 |
Q |
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||||||||||| || |||||| |||||| | |||||| || ||||||||||||||| |||||||| ||| ||||| |
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| T |
27504021 |
ttggatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataacttcttgcttg |
27504097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 7400539 - 7400625
Alignment:
| Q |
69 |
ttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactgtggctgctgctca |
155 |
Q |
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| T |
7400539 |
ttggggtgaggaaggatattacaagatctgcagaggccgaaatgtatgtggagtggattccatggtctccactgttgctgcagctca |
7400625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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