View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_high_11 (Length: 204)
Name: NF16784_high_11
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 45793889 - 45793788
Alignment:
| Q |
15 |
actaaaaaggaataaaactaaagtgagaaatatatatagaaagggagaataagaccagaaatagtacagagaatatcgcgcttaccgaactttctaccag |
114 |
Q |
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| T |
45793889 |
actaaaaaggaataaaactaaagtgagaaatatatatagaaagggagaataagaccagaaatagtacagagaatatcgcgcttaccgaactttctaccag |
45793790 |
T |
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| Q |
115 |
tt |
116 |
Q |
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|| |
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| T |
45793789 |
tt |
45793788 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 45793757 - 45793683
Alignment:
| Q |
116 |
tcgtcatctggaaagaccatagacattgtaagcaaatatcgacacatcaaagcttgaattcagtcatgaagaaat |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45793757 |
tcgtcatctggaaagaccatagacattgtaagcaaatatcgacacatcaaagcttgaattcagtcatgaagaaat |
45793683 |
T |
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