View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_high_3 (Length: 485)
Name: NF16784_high_3
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 48001181 - 48000740
Alignment:
| Q |
17 |
aaagcggaccttccctaaataatttttccctttccttctgtcccatttccctaaggtaacggttaagagtaaacccgtccaagtcaagttaacttcaact |
116 |
Q |
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| T |
48001181 |
aaagtggaccttccctaaataatttttccctttccttctgtcccatttccctaaggtaacggttaagagtaaacccgtccaagtcaagttaacttcaact |
48001082 |
T |
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| Q |
117 |
aaaccaatatttgcagttacccatgtgggccaagtcatgcatacaccaattttccttctaagccaagttctttttcattttacaacaccaactattagtg |
216 |
Q |
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| T |
48001081 |
aaaccaatacttgcagttacccatgtgggccaagtcatgcatacaccaattttccttctaagccaagttctttttcattttacaacaccaactattagtg |
48000982 |
T |
|
| Q |
217 |
tgtttgttatatggaaggtgtatataaaaatcaaactaaacaaacaaatccgtgggttccaaccaatgtttcccctttttggtgaaaggttagaaaagct |
316 |
Q |
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| T |
48000981 |
tgtttgttatatggaaggtgtatataaaaatcaaactaaacaaacaaatccgtgggttccaaccaatgttccccctttttggtgaaaggttagaaaagct |
48000882 |
T |
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| Q |
317 |
aatcctagagaatggaaaataatgggtctctaaacacggcatgcaattatataatatacgtttttagatactataaattaaaatattcttgttgttattg |
416 |
Q |
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| T |
48000881 |
aatcctagagaatggaaaataatgggtctctaaacacggcatgcaattatataatatacgtttttagatactataaattaaaatattcttgttgttattg |
48000782 |
T |
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| Q |
417 |
caaatgtggatgtggtgtagtgggtgacaacatgaagataga |
458 |
Q |
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| T |
48000781 |
taaatgtggatgtggtgtagtgggtgacaacatgaagataga |
48000740 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 53100865 - 53100814
Alignment:
| Q |
293 |
ttttggtgaaaggttagaaaagctaatcctagagaatggaaaataatgggtc |
344 |
Q |
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| T |
53100865 |
ttttggtgaaaggttagaaaagctaatcctagagaaaggaaaataatgggtc |
53100814 |
T |
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