View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16784_high_9 (Length: 252)
Name: NF16784_high_9
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_high_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 41969482 - 41969249
Alignment:
| Q |
16 |
atatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41969482 |
atatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaa |
41969383 |
T |
|
| Q |
116 |
ctcaacgtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41969382 |
ctcaacgtttcttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagt |
41969283 |
T |
|
| Q |
216 |
tgtgttgtttcttcttgtacagagcaaggtaaatcga |
252 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
41969282 |
tg---tgtttcttcttgtacagagcaaggtaaatcga |
41969249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 1236537 - 1236315
Alignment:
| Q |
24 |
agctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaa-atgctataaatacgtaactcaac- |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
1236537 |
agctaaaggtggctctaggtggatctttcatcactaaaatagagcca-cctttcatagattcagttcatgtagaatttgctataaatacgtaactcaaca |
1236439 |
T |
|
| Q |
122 |
--gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttgtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236438 |
attcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttcttagttg-- |
1236341 |
T |
|
| Q |
220 |
ttgtttcttcttgtacagagcaaggta |
246 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
1236340 |
-tgtttcttcttgtacaaagcaaggta |
1236315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University