View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_1 (Length: 592)
Name: NF16784_low_1
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 10316464 - 10317037
Alignment:
| Q |
1 |
gtttcattgtttatgtcattgctcaaacatgtgtcttgtgaaatgctcaccatagaattgttggtggagaattgctccatcttgcactctttattttcca |
100 |
Q |
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| T |
10316464 |
gtttcattgtttatgtcattgctcaaacatgtgtcttgtgaaatgctcaccatagaattgttggtagagaattgctccatcttgcactctttattttcca |
10316563 |
T |
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| Q |
101 |
atccataaatgtaaccattgttattattcccttgattcatgtaagaataatttgataacatgttctcattcaagggtgtgtttggaatttggatttgagg |
200 |
Q |
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| T |
10316564 |
atccataaatgtaaccattgttattattcccttgattcatgtaagaataatttgataacatgttctcattcaagggtgtgtttggaatttggatttgagg |
10316663 |
T |
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| Q |
201 |
ttgaagttgatgtgatgaagatgagctactttgcattaatggaccattgaaattcccttggttggtagcatgataattatttgtgagattaatttcattg |
300 |
Q |
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| T |
10316664 |
ttgaagttgatgtgatgaagatgagctactttgcattaatggaccattgaaattcccttggttggtagcatgataattatttgtgagattaatttcattg |
10316763 |
T |
|
| Q |
301 |
ttcattaagtagcttggaaaacaataaccatttgatgatgaaggtgatgaattgattcctttgaagtcatgatcatcaatggtattgttgctaaaaggag |
400 |
Q |
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| T |
10316764 |
ttcattaagtagcttggaaaacaataaccatttgatgatgaaggtgatgaattgattcctttgaagtcatgatcatcaatggtattgttgctaaaaggag |
10316863 |
T |
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| Q |
401 |
gatccacaagaggtgggagtgaagaaaaatccaataaatcatcacctattgagttcatccttaaaagattggaaaatgaagtagtctttttaacttcaat |
500 |
Q |
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| T |
10316864 |
gatccacaagaggtgggagtgaagaaaaatccaataaatcatcacctattgagttcatccttaaaagattggaaaatgaagtagtctttttaacttcaat |
10316963 |
T |
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| Q |
501 |
gttgttcttgatgaaaatctttgacacaacccaatcatcctacaataatatatcatatcaatatcatgcatttc |
574 |
Q |
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| T |
10316964 |
gttgttcttgatgaaaatctttgacacaacccaatcatcctacaataatatatcatatcaatatcatgcatttc |
10317037 |
T |
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