View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_13 (Length: 204)
Name: NF16784_low_13
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36357848 - 36358051
Alignment:
| Q |
1 |
tgtcaacataaatatattcaaagtatgagaaaatattactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatc |
100 |
Q |
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| T |
36357848 |
tgtcaacataaatatattcaaagtgtgagaaaatattactgattatgtcaattgaagtacggccattggtaaatcttccggtaggaccagctggaaaatc |
36357947 |
T |
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| Q |
101 |
aatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtact |
200 |
Q |
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| T |
36357948 |
aatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtact |
36358047 |
T |
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| Q |
201 |
tggg |
204 |
Q |
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|||| |
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| T |
36358048 |
tggg |
36358051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 5573428 - 5573573
Alignment:
| Q |
36 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
135 |
Q |
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| T |
5573428 |
ttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagagg |
5573527 |
T |
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| Q |
136 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaa |
181 |
Q |
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| T |
5573528 |
taggaaggttattgttgtttccactatcagataaagaatctccaaa |
5573573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 5576591 - 5576758
Alignment:
| Q |
37 |
tactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggt |
136 |
Q |
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| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgcagaggt |
5576690 |
T |
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| Q |
137 |
agctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
204 |
Q |
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| T |
5576691 |
gggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 5586959 - 5587127
Alignment:
| Q |
36 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
135 |
Q |
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|||||||||||||||| |||||| || || |||||||||||||| || || || ||||| || || ||||| || |||||||| ||| ||| || |
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| T |
5586959 |
ttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccatagggattgtaattagattttgcagagg |
5587058 |
T |
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| Q |
136 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
204 |
Q |
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| T |
5587059 |
taggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttggg |
5587127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 5593300 - 5593363
Alignment:
| Q |
141 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
204 |
Q |
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| T |
5593300 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
5593363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 7017571 - 7017710
Alignment:
| Q |
63 |
ccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgt |
162 |
Q |
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| T |
7017571 |
ccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgt |
7017670 |
T |
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| Q |
163 |
ctgataaagaatctccaaaaatgaaaagacatggtacttg |
202 |
Q |
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| T |
7017671 |
cagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
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