View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_2 (Length: 522)
Name: NF16784_low_2
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 42676935 - 42677281
Alignment:
| Q |
13 |
aatattccctctaaaagttctat----ttcaatgaaataaatactaaccaaatctttttataaaagttata--tttgaatcaaataattagtaaatcttt |
106 |
Q |
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| T |
42676935 |
aatattccctctaaaagttatatatatttcaatgaaataa----taaccaaatctttttataaaagttatatatttgaatcaaataattagtaaatcttt |
42677030 |
T |
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| Q |
107 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
206 |
Q |
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| T |
42677031 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
42677130 |
T |
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| Q |
207 |
tgctccttctctctctcataaaacccttattctttgctgatcgtgctcctaaacaaagcccttattcttgatcaaaggaagtgtttgagaaggtcagtga |
306 |
Q |
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| T |
42677131 |
tgctccttctctctctcataaaacccttattctttgctgatcgtgctcctaaacaaagcccttattcttgatcaaaggaagtgtttaagaaggtcagtag |
42677230 |
T |
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| Q |
307 |
ctatatgaacaaattctgagtttcgtatcgtagtgtctctttgcttctagg |
357 |
Q |
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| T |
42677231 |
ctatatgaacaaattctgagtttcatgtcatagtatctctttgcttctagg |
42677281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 425 - 504
Target Start/End: Original strand, 42677349 - 42677429
Alignment:
| Q |
425 |
tcccttctttactgagaaagggtttt-gtgttgcttgttttgatgttagagaatggatacttgttaaataagtgatgcatg |
504 |
Q |
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| T |
42677349 |
tcccttctttactgagaaagggtttttgtgttacatgttttgatgttagagaatggatacttgttaaataagtgatgcatg |
42677429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 54704951 - 54704911
Alignment:
| Q |
289 |
gtttgagaaggtcagtgactatatgaacaaattctgagttt |
329 |
Q |
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| T |
54704951 |
gtttgagaaggtcagaggctataggaacaaattctgagttt |
54704911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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