View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_4 (Length: 471)
Name: NF16784_low_4
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 460
Target Start/End: Complemental strand, 42206873 - 42206409
Alignment:
| Q |
20 |
gttcactgctgtggaagagaaagaagaaccgcaatgtccacctggactcagacagtacgaaaccatggttgttttgaggcctgacatgtctgaggatgag |
119 |
Q |
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| T |
42206873 |
gttcactgctgtggaagagaaagaagaaccgcaatgtccacctggactcagacagtacgaaaccatggttgttttgaggcctgacatgtctgaggatgag |
42206774 |
T |
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| Q |
120 |
cgtcttgcactcacccagaagtacgaggaggtgaaattcttaacctttttacttctttc--------------------gttaatccatttgaagcttga |
199 |
Q |
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| T |
42206773 |
cgtcttgcactcacccagaagtacgaggaggtcaaattcttaacctttttacttctttctcttaccttttgtttcttaagttaatccatttgaagcttga |
42206674 |
T |
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| Q |
200 |
taatgagtaggttttatttatgtgtgtgatactat-ctagaggcgaccgtatttgttagaattgcaatcaatccgcaaactgacaattcgtatcaacaaa |
298 |
Q |
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| T |
42206673 |
tgatgagtaggttttatatatgtgtgtgatactatactagaggcgaccgtatttgttagaattgcaatcaatccgcaaactgagaattcgtatcaacaaa |
42206574 |
T |
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| Q |
299 |
catacaattgctaagggctttctgtacatgaatcagtataattctatttctgtatcacaccaatactaactacatgatt---------atttatttgcat |
389 |
Q |
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| T |
42206573 |
catacaattgctaagggctgtctgtacatgaatcagtataa------ttctgtatcacaccaatactaactacatgattcagtgattattttatttgcat |
42206480 |
T |
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| Q |
390 |
tcactatgtttgtttgatttgttaccttgtttccattctttcaaaacaaacactttacacagtcatttcat |
460 |
Q |
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| T |
42206479 |
tcactatgtttgtttgatttgttaccttgtttccattctttcaaaacaaacactttacacagtcatttcat |
42206409 |
T |
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