View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_5 (Length: 459)
Name: NF16784_low_5
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 4047089 - 4047537
Alignment:
| Q |
1 |
caccagtcaatacattctctgctaacctcaccttgccagaggaccaattgtacaatgtcttcaccaatttataatttgttagacatatgtctacacttcc |
100 |
Q |
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| T |
4047089 |
caccagtcaatacattctctgctaacctcaccttgccagaggaccaatggtacaatgtcttcaccaatttataatttgttagacatatgtctacacttcc |
4047188 |
T |
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| Q |
101 |
tccaacaatgctatttgatccgtccattttcaaaatctagaggaaatttcatgggggaaaatttaatgaaaattaaacacataatcatggatgtacacat |
200 |
Q |
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| T |
4047189 |
tccaacaatgctatttgatccgtccattttcaaaatctagaggaaatttcatgggggaaaatttaatgaaaattaaacacataatcatggatgtacacat |
4047288 |
T |
|
| Q |
201 |
acaaaatagatttaagactttcacacatcataagacttgttgttcaaacaattgtcgttc-aaaaaatatgtatcatcttgatttgtcatgacaagagaa |
299 |
Q |
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| T |
4047289 |
acaaaatagatttaagactttcacacatcataagacttgttgttcaaacaattgtcgttcaaaaaaatatgtatcttcttgatttgtcatgacaagagaa |
4047388 |
T |
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| Q |
300 |
caagagattttcatgannnnnnnnatattaataaagagctcttgtaatcatttagtgggggtttggatgcccatttgcaccttgaatatcacgtttcgat |
399 |
Q |
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| T |
4047389 |
caagagattttcatgatttttgttatattaataaagagctcttgtaatcatttagtgggggtttggatgcccatttgcaccttgaatatcacgttttgat |
4047488 |
T |
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| Q |
400 |
gcacttttagacgtgaaaatggaaaagccacaatatgtagcgccttcat |
448 |
Q |
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| T |
4047489 |
gcatttttagatgtgaaaatggaaaagccacaatatgtagcgccttcat |
4047537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 4747918 - 4747839
Alignment:
| Q |
360 |
gtttggatgcccatttgcaccttgaatatcacgtttcgatgcacttttagacgtgaaaatggaaaagccacaatatgtagc |
440 |
Q |
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| T |
4747918 |
gtttggatgcacgtttacaccttaaatatcacgtttcgaggcac-tttagatgggaaaatggagaagccacaatatgtagc |
4747839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Complemental strand, 21524161 - 21524103
Alignment:
| Q |
377 |
caccttgaatatcacgtttcgatgcacttttagacgtgaaaatggaaaagccacaatatg |
436 |
Q |
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| T |
21524161 |
caccttaaatatcacgtttcgaggcac-tttagatgggaaaatggagaagccacaatatg |
21524103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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