View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16784_low_7 (Length: 335)

Name: NF16784_low_7
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16784_low_7
NF16784_low_7
[»] chr5 (1 HSPs)
chr5 (46-312)||(41968926-41969181)
[»] chr1 (2 HSPs)
chr1 (166-312)||(3722450-3722597)
chr1 (176-310)||(32953608-32953742)
[»] chr8 (2 HSPs)
chr8 (231-312)||(35739690-35739771)
chr8 (240-312)||(37080806-37080878)
[»] chr7 (1 HSPs)
chr7 (173-312)||(7805573-7805712)
[»] chr3 (1 HSPs)
chr3 (46-132)||(1236150-1236237)
[»] chr2 (1 HSPs)
chr2 (203-310)||(36033683-36033789)
[»] scaffold0011 (1 HSPs)
scaffold0011 (231-312)||(228870-228951)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 46 - 312
Target Start/End: Complemental strand, 41969181 - 41968926
Alignment:
Q  46 accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969181 accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt 41969082  T
Q  146 tcgattgttatggatgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttct 245  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  41969081 tcgattgttaccggtgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttctt-----------ct 41968993  T
Q  246 tttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 312  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41968992 tttccaatgtaacaatactcaagcatggaaccacgaattcataaacttaaaaaatctcatctataaa 41968926  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 3722450 - 3722597
Alignment:
Q  166 caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc 265  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||  |||      
T  3722450 caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccg 3722549  T
Q  266 aagcatggaaccacaaattcataaac-ttaaaaaatctcatctctaaa 312  Q
    ||  |||||||||| ||||||||||| | |||||||||||||||||||    
T  3722550 aattatggaaccactaattcataaacataaaaaaatctcatctctaaa 3722597  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 32953742 - 32953608
Alignment:
Q  176 cacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaa 275  Q
    |||||||||| |||||| |||||| |||||||| |||||||||| ||  ||||| | |||||| |||| |||| |||||| |||||| | || || | ||    
T  32953742 cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa 32953643  T
Q  276 ccacaaattcataaacttaaaaaatctcatctcta 310  Q
    | || |||||||||||   ||||||||||||||||    
T  32953642 caacgaattcataaacaccaaaaatctcatctcta 32953608  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 35739771 - 35739690
Alignment:
Q  231 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 312  Q
    |||||||| |||||||||||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35739771 ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaa 35739690  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 37080806 - 37080878
Alignment:
Q  240 acttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 312  Q
    |||||||||||| ||| |||||||| ||||| | ||||||||||||||||||   || |||||||||||||||    
T  37080806 acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaa 37080878  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 7805573 - 7805712
Alignment:
Q  173 ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatg 272  Q
    |||||||||||||||||||| || |||  |||||||||||||||||  ||  |||||||||||||  |||||||||||||||| || ||||| ||||| |    
T  7805573 ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaag 7805672  T
Q  273 gaaccacaaattcataaacttaaaaaatctcatctctaaa 312  Q
     ||| || |||||||||||   ||||||| ||||||||||    
T  7805673 caactacgaattcataaacaccaaaaatcccatctctaaa 7805712  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 1236237 - 1236150
Alignment:
Q  46 accttcgtccataattttatttttggatataagttttt-cctttaaatatgtgaatcacaagtataatatttataaacttgatcaagg 132  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  1236237 accttcgtctataattttatttttgtatataaattttttcctttaaacatgtgaatcacaagtataatatttattaacttgatgaagg 1236150  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 310
Target Start/End: Complemental strand, 36033789 - 36033683
Alignment:
Q  203 ctcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatct 302  Q
    |||||| |||||||||| ||  ||||||| ||| |||||||||||| |||||| ||| |||| ||||| | |||||| |||||||||||   ||||||||    
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaac-acaaaaatct 36033691  T
Q  303 catctcta 310  Q
    ||||||||    
T  36033690 catctcta 36033683  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 228870 - 228951
Alignment:
Q  231 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 312  Q
    |||||||||| |||||||||||||| ||  |||| ||||| | ||||||  ||||||||||   ||| ||||||||||||||    
T  228870 ttctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaa 228951  T

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