View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16784_low_9 (Length: 254)
Name: NF16784_low_9
Description: NF16784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16784_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 35345399 - 35345145
Alignment:
| Q |
1 |
ctttaccacactgacacaatggctttgga-aaaagtgaaaccattgtaacagtcgtgtatactctaacacacccttgtgaaaatgacaacttttcactac |
99 |
Q |
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| T |
35345399 |
ctttaccacactaacacaatggctttggggaaaagtgaaaccattgtaacagtcgtgtatgctctaacacacccttgtgaatatgacaacttttcactac |
35345300 |
T |
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| Q |
100 |
caaataatcataatgctttcacctaaaacaattactccttattaaagatttatccnnnnnnnnnnnnnnnnnnnnacacatgatatgccttcattctccc |
199 |
Q |
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| T |
35345299 |
caaataatcataatgctttcacctaagacaattactccttattaaagatttatccttttttatttttatttttttacacatgctatgccttcattctccc |
35345200 |
T |
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| Q |
200 |
acatcccttggtaaccattttcttcttgctctttctccttttctgttgtcctttg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35345199 |
acatcccttggtaaccattttcttcttgctctttctccttttctgttgtcctttg |
35345145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3739295 - 3739243
Alignment:
| Q |
1 |
ctttaccacactgacacaatggctttggaaaaagtgaaaccattgtaacagtc |
53 |
Q |
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| T |
3739295 |
ctttaccacactgacacaatggctttgggaaaagtgaaaccattgtaatagtc |
3739243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5147394 - 5147446
Alignment:
| Q |
1 |
ctttaccacactgacacaatggctttggaaaaagtgaaaccattgtaacagtc |
53 |
Q |
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| T |
5147394 |
ctttaccacattgacacaatggctttgggaaaagtaaaaccattgtaatagtc |
5147446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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