View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16785_low_2 (Length: 348)
Name: NF16785_low_2
Description: NF16785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16785_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 18218312 - 18217980
Alignment:
| Q |
1 |
tatttcaattgcatatataatgtgtgtgctgtgctctattaggaattcatataatgtttactagaacttcatatattttactccgaatatttaaatcaat |
100 |
Q |
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| T |
18218312 |
tatttcaattgcatatataatgtgtgtgctgtgctctattaggaattcatataatgtttaatagaacttcatgtattttactctgaatatttaaatcaat |
18218213 |
T |
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| Q |
101 |
tataatatttaataaaaatatcctttaattgcatttttaggcgaaccaattaactgaaccaaaccgcatatcctcaatttagtttagttcagtttcactt |
200 |
Q |
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| T |
18218212 |
tataatatttaataaaaatatcctttaattgcatttttaggcgaaccaatcaactgaaccaaaccgcatatcctcaatttagtttagttcagtttcactt |
18218113 |
T |
|
| Q |
201 |
ctaagaacattgaaaactaatctggatcgatataaatttgatcggtttgaacattttttgaccgtaaatcaaaccaaatcgttacacttaatgatacact |
300 |
Q |
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| T |
18218112 |
ctaagaacattgaaaactaatctggatcgatataaatttgatcggtttgaacaatttttgaccgtaaaccaaaccaaatcgttacacttaatgat--act |
18218015 |
T |
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| Q |
301 |
ctcatgccttggccatgaatataactacctttgat |
335 |
Q |
| |
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||||||||||||||| ||| |||||||| |||||| |
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| T |
18218014 |
ctcatgccttggccacgaacataactacttttgat |
18217980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 335
Target Start/End: Complemental strand, 43010430 - 43010328
Alignment:
| Q |
229 |
gatataaatttgatcggtttgaacattttttgaccgtaaatcaaaccaaatcgttacacttaatgatacactctcatgccttggccatgaatataactac |
328 |
Q |
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||||||||||||||| |||||||||||| |||| || || |||||||||||||||||| ||||| || ||||||||| ||||| |||||||||||| |
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| T |
43010430 |
gatataaatttgatcactttgaacattttatgactgtgaaccaaaccaaatcgttacacctaatg----accctcatgcctcggccacgaatataactac |
43010335 |
T |
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| Q |
329 |
ctttgat |
335 |
Q |
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|||||| |
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| T |
43010334 |
ttttgat |
43010328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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