View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16785_low_3 (Length: 341)
Name: NF16785_low_3
Description: NF16785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16785_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 47192105 - 47192405
Alignment:
| Q |
25 |
ccacgaccaacggtaacattagtatcctttggcaaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagt |
124 |
Q |
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| T |
47192105 |
ccacgaccaacggtaacattagtatcctttggcaaagctttgattttccaacagatactcttcttcctggccaagaaattaatgagcgagcaaccttagt |
47192204 |
T |
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| Q |
125 |
ttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatct |
224 |
Q |
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| T |
47192205 |
ttcatccaaaagtgaaacaaactattcctcaggtttctataagttttatttcgacaacgacaatgctcttcgtcttctattcaaaagtcctttgttatct |
47192304 |
T |
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| Q |
225 |
agtgtctattggccatcaccttgggtattacctgttgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttca |
324 |
Q |
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| T |
47192305 |
agtgtctattggccatcaccttgggtattacctgttgatgcaggaagatcaacttataatgttactaaaatcgcgctactcgattcctttggccatttca |
47192404 |
T |
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| Q |
325 |
t |
325 |
Q |
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| T |
47192405 |
t |
47192405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 26693264 - 26693303
Alignment:
| Q |
54 |
tggcaaagctttgattttccaacagatactcttcttcctg |
93 |
Q |
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| T |
26693264 |
tggcaaagctttgattttccaacagataccctccttcctg |
26693303 |
T |
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