View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16785_low_4 (Length: 320)
Name: NF16785_low_4
Description: NF16785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16785_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 167 - 313
Target Start/End: Complemental strand, 40363580 - 40363434
Alignment:
| Q |
167 |
gaacagaaattattcttctcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaattcttatggaaaattgtaacatccaa |
266 |
Q |
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| T |
40363580 |
gaacagaaattattcttctcaaatctacaaatagatttcttattattctgaataaccctaaatgttgacaccaattcttatggaaaatcgtaacatccaa |
40363481 |
T |
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| Q |
267 |
aggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
313 |
Q |
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| T |
40363480 |
aggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
40363434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 40363739 - 40363620
Alignment:
| Q |
18 |
gatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatcc-nnnnnnnnnnnnnnaacaaaacaataatcctattgttacaag |
116 |
Q |
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| T |
40363739 |
gatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatccttttttttttcttctaacaaaacaataatcctattgttacaag |
40363640 |
T |
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| Q |
117 |
tacaacaatagtcaatctag |
136 |
Q |
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| T |
40363639 |
tacaacaatagtcaatctag |
40363620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 40359399 - 40359271
Alignment:
| Q |
178 |
attcttctcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaa-ttcttatggaaaattgtaacatccaaaggacaaaat |
276 |
Q |
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| T |
40359399 |
attcttttcaaatctacgaatagatttcttattattccgaataaccctagacatcggtgccaacgtcttatgcagaattgtaatatcaaaaggac-aaac |
40359301 |
T |
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| Q |
277 |
aatttccaacaactccttccaataaagttc |
306 |
Q |
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| T |
40359300 |
aaactccaacaactcctgccaatgaagttc |
40359271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 40359492 - 40359453
Alignment:
| Q |
94 |
aacaataatcctattgttacaagtacaacaatagtcaatc |
133 |
Q |
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| T |
40359492 |
aacaacaatccaattgttacaagtacaacaatagtcaatc |
40359453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 11346535 - 11346465
Alignment:
| Q |
242 |
tcttatggaaaattgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
313 |
Q |
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| T |
11346535 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttcttctgtg |
11346465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 11346690 - 11346649
Alignment:
| Q |
95 |
acaataatcctattgttacaagtacaacaatagtcaatctag |
136 |
Q |
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| T |
11346690 |
acaataatcctattgttacaagtactaaaatagtcgatctag |
11346649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 11346737 - 11346681
Alignment:
| Q |
18 |
gatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatcc |
74 |
Q |
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| T |
11346737 |
gatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcc |
11346681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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