View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16785_low_9 (Length: 213)
Name: NF16785_low_9
Description: NF16785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16785_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 43324763 - 43324932
Alignment:
| Q |
15 |
aatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttctttttgaattgtaaagcttccaatgtagaattccaaccacaatga |
114 |
Q |
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| T |
43324763 |
aatataggcacaattcacaaactgatctccagccacagggtaacacaacaatttcttttggaattgtaaagcttccaatgtagaattccaaccacaatga |
43324862 |
T |
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| Q |
115 |
gtgataaaacaacctacagaattgtgttgcaaaatctctttttgtggtgcccaagaaacaaccaatcctt |
184 |
Q |
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| T |
43324863 |
gtgataaaacaacctacagaattgtgttccaaaatctctttttgtggggcccaagaaacaaccaatcctt |
43324932 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30817184 - 30817232
Alignment:
| Q |
82 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
130 |
Q |
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| T |
30817184 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30817232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30858645 - 30858693
Alignment:
| Q |
82 |
aaagcttccaatgtagaattccaaccacaatgagtgataaaacaaccta |
130 |
Q |
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| T |
30858645 |
aaagcttccaatgtggaattccaaccacaatgtgttacaaaacacccta |
30858693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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